Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1066 ATGGATATGAAGGGATATTCAGGTTTCAGGACAAATTATAGGAATGACCCATTTCTTTCAGGTCATCAACAACACCGCACAAGAAGAAGACGACAACGCCAATGCTTACAAGAAAATCATGTTGCCTCACTACAAACAAGCCCAACGAATCATTCTCTGAAATTGGCTTCTTCTTCTTCTGCGACTAGACAAAATACTACAAGCCTGCCTCTGTTTTCTGCTGCTTTTGTTGCTTTCCTTCTTCTTTCTTTTATCACTCCTGTTCTGTCTCACTCTTCACCAACCAATCAAACTTTCCGACCTGTTCCTCAGTTGCTCAAGCTAAGGAGAATCAGAGCTCTCCTGAAGAAGATCAACAAGCCTTCTGTCAAGACCATTAAGAGCCCTGACGGGGATTTGATAGATTGTGTTTTATCGCATCATCAGCCAGCTTTTGACCATCATGAGCTTAAAGGGAAGAAGCCATTGGATCCACCAGAAAGGCCAAAGGGCCACAAAGACAAAGGAGAAGAAGTTATCGAGAGCTTTCAGCTATGGACTGATTCTGGGGAAACATGCCCAGAAGGAACAGTTCCCATCAGAAGAACAACAGAACAAGACATCCTAAGAGCAAGTTCCATTCGTAGATTCGGAAGAAAACCAAGAAGCGTGCGAAGAGACTCAACTGGCTCTGGTCATGAGCATGCAGTGGTTTTTGTGAACGGAGATCAATATTTTGGAGCAAAAGCAGGCATCAACGTGTGCACACCCAAAGTAACTGACCAATACGAATTCAGCTTATCACAAATATGGGTCATTGCAGGCTCATTTGGTCATGACTTGAATACCATCGAAGCTGGTTGGCAGGTGAGCCCAGAACTATATGGGGACAACTATCCGAGGTTCTTCACTTATTGGACTACAGATGCATATCAAGCCACTGGATGCTACAACTTGCTGTGTTCAGGTTTTGTGCAGACCAACAATAGAATAGCCATAGGAGCAGCAATCTCTCCAAGATCAGCTTACAATGGAAGACAGTTTGATATTGGATTAATGGTCTGGAAGGATCCGAAACACGGGCACTGGTGGCTGGAGTTCGGGTCGGGTCTGCTGGTGGGTTACTGGCCGGCGTACTTGTTCAGTCACCTGAGAAGCCACGCGAGCATGGTGCAATTCGGAGGAGAGATAGTGAACACGCGATCGAGAGGGTATCACACGGGCACTCAGATGGGAAGCGGGCATTTCGCCGGAGAAGGATTCAGAAAAGCCGCTTATTTCAGGAACTTGCAGGTTGTCGATTGGGACAACAATTTGCTTCCCCTCACCAACATTCACCAGCTTGCCGATCATTCCAATTGCTACGATATCAGACAGGGCCGTAATAATGTTTGGGGAACTTATTTCTATTACGGTGGCCCCGGCAGAAATATCCGATGCCCCTGA 1425 0.4618 MDMKGYSGFRTNYRNDPFLSGHQQHRTRRRRQRQCLQENHVASLQTSPTNHSLKLASSSSATRQNTTSLPLFSAAFVAFLLLSFITPVLSHSSPTNQTFRPVPQLLKLRRIRALLKKINKPSVKTIKSPDGDLIDCVLSHHQPAFDHHELKGKKPLDPPERPKGHKDKGEEVIESFQLWTDSGETCPEGTVPIRRTTEQDILRASSIRRFGRKPRSVRRDSTGSGHEHAVVFVNGDQYFGAKAGINVCTPKVTDQYEFSLSQIWVIAGSFGHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSAYNGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRSHASMVQFGGEIVNTRSRGYHTGTQMGSGHFAGEGFRKAAYFRNLQVVDWDNNLLPLTNIHQLADHSNCYDIRQGRNNVWGTYFYYGGPGRNIRCP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1066 474 Pfam Neprosin 256 467 IPR004314 -
Lele17g1066 474 Pfam Neprosin activation peptide 125 231 IPR025521 -
Lele17g1066 474 FunFam Putative carboxyl-terminal proteinase 247 366 - -
Lele17g1066 474 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 111 470 - -
Lele17g1066 474 Gene3D - 248 361 - -
Lele17g1066 474 MobiDBLite consensus disorder prediction 147 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1066 Lele-ChrLele17 21187144 21190000 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1746 22 22765429 22768451 Lele17g1066 17 21187144 21190000 CCT
Lele23g0238 23 1637676 1638329 Lele17g1066 17 21187144 21190000 CCT
Lele24g1711 24 22417808 22420664 Lele17g1066 17 21187144 21190000 CCT
Lele17g1066 17 21187144 21190000 Lele19g0494 19 2808340 2811216 hybridization
Lele17g1066 17 21187144 21190000 Lele20g0961 20 15709522 15712818 hybridization