Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0486 ATGGGGGAGGGTACGGAGGGTGGTGGTGTTTCTTTGCCTTCAGGTCCAGACGCCAAGAAGAGGAGGGTCACCTATTTCTACGAACCCACCATCGGCGATTACTACTACGGCCAAGGCCATCCCATGAAGCCCCATCGGATTCGCATGGCCCATAATCTCATCGTCCATTACTACCTCCATCGCCGCATGGAAATCAGTTGTCCTTTCCCCGCCGCCGCCGAAGACATCCGCCGTTTTCACACCGACGAATACGTTGACTTCCTCTCCTCCGTCACGCCCGAGACCCTCGGTGAGAACACATTCTCTCGTCAGCTCAAGCGCTTCAATGTTGGCGAGGACTGTCCCGTCTTTGACGGCTTATTCAATTTTTGTCAGGCCTCTGCTGGTGGTTCCATTGGCGCCGCCGTCAAGTTGAACCGTGGCGATGCTGATATTGCCATCAACTGGGCTGGTGGTCTGCACCATGCTAAGAAGTCTGAGGCTTCTGGGTTTTGTTATGTCAATGATATTGTCCTCGGCATTCTTGAGCTGCTCAAGGTCCACAGGCGTGTATTATATGTTGACATTGATGTTCACCATGGAGATGGCGTTGAGGAAGCTTTCTATACAACTGATAGAGTGATGACAGTTTCTTTTCATAAGTTTGGGGATTTTTTCCCAGGCACTGGGCACATTAAAGATGTAGGGGCGGGCCCAGGGAAGAATTATGCTTTAAATGTCCCGTTGAATGATGGGATGGATGATGAGAATTTCTGTGGGTTGTTTCGCCCCATCATTCAGAAAGTCATGGAGATGTATCAACCTGATGCAGTTGTTCTTCAATGTGGTGCTGATTCATTGTCTGGTGATAGGCTAGGTTGCTTTAATTTGTCTGTTAAGGGTCATGCGGATTGCCTTCGTTTCGTTAGATCTTTCAATGTTCCTTTGATGGTCTTGGGTGGGGGAGGATATACAATCAGGAATGTTGCTCGTTGCTGGTGTTATGAGACAGCGGTGGCTGTAGGTGTTGAACCTGATAATCAGTTGCCGTACAATGAATATTATGAGTATTTTGGCCCAGACTACACTCTTCATGTTGATCCATGTAACATGGAGAACCTTAACTCACCCAAGGATATGGAAAAAATAAGAATGACACTATTAGAACAACTCTCCAGACTTCCTCATGCACCCAGTGCGCCTTTTCAGACAACACCATCTACAATTGAAGTTCCAGAAGAGGTGGAAGAGGACATAGATCGAAGACCAAAACGACGCATATGGAGTGGTGAAGATTATGATTCTGATCATGATGAAGATGTGAAGATTAGTCCAAAATACTCAAATATAAGTGATGTACCTGATGAGATGGAAGAAGAGAAGCCAGAAAGGCACCCATCATCCTGA 1386 0.4704 MGEGTEGGGVSLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYLHRRMEISCPFPAAAEDIRRFHTDEYVDFLSSVTPETLGENTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGPGKNYALNVPLNDGMDDENFCGLFRPIIQKVMEMYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFVRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNQLPYNEYYEYFGPDYTLHVDPCNMENLNSPKDMEKIRMTLLEQLSRLPHAPSAPFQTTPSTIEVPEEVEEDIDRRPKRRIWSGEDYDSDHDEDVKISPKYSNISDVPDEMEEEKPERHPSS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0486 461 PANTHER HISTONE DEACETYLASE 2-RELATED 11 344 - -
Lele19g0486 461 MobiDBLite consensus disorder prediction 445 461 - -
Lele19g0486 461 MobiDBLite consensus disorder prediction 408 438 - -
Lele19g0486 461 Pfam Histone deacetylase domain 40 331 IPR023801 -
Lele19g0486 461 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Lele19g0486 461 FunFam Histone deacetylase 19 398 - -
Lele19g0486 461 SUPERFAMILY Arginase/deacetylase 21 386 IPR023696 -
Lele19g0486 461 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Lele19g0486 461 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Lele19g0486 461 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Lele19g0486 461 CDD HDAC_classI 26 333 - -
Lele19g0486 461 Gene3D Histone deacetylase domain 19 394 IPR037138 -
Lele19g0486 461 MobiDBLite consensus disorder prediction 388 461 - -
Lele19g0486 461 PIRSF HDAC_I_euk 8 460 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0486 Lele-ChrLele19 2752596 2755928 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1763 21 25369626 25372323 Lele19g0486 19 2752596 2755928 CCT
Lele22g1738 22 22724530 22727301 Lele19g0486 19 2752596 2755928 CCT
Lele23g0244 23 1671886 1674520 Lele19g0486 19 2752596 2755928 CCT
Lele24g1706 24 22384087 22386867 Lele19g0486 19 2752596 2755928 CCT
Lele17g1075 17 21237854 21241181 Lele19g0486 19 2752596 2755928 hybridization
Lele18g0466 18 2721505 2725005 Lele19g0486 19 2752596 2755928 hybridization