LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g1738	ATGAAGGCGACCCTGAGATACTTAGCAGGAACGGCAGGGCCTAGTGGTTATGGCTCTAATTCAACAGCTGAGCAAGTTACTGAAGATTGTTCTTGCTTTCTCTCTTCTCATCATGTAACTGCACTCATCACAGGTGGGACTTCTGGGATTGGAGAAGAAACAGCAAGAGTGTTGGCAAAGCGAGGAGTGAGAGTGGTGATTGGAGCGAGGGACATGAAGAAGGCGAGAGAAGTGAGACAGAATATTCAGAAAGAAACTCCGAACGCTGAGGTTATAGTGTTGGAAATCGATCTCAGTTCTTTCGCTTCTGTTCAGAGATTTTGTTCTGAGTTTTTGGCTCTTCAACTTCCCCTCAATATCCTCATAAACAATGCTGGAATATTCTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAGATGACATTTGCCACCAATTACTTGGGACATTTTTTGTTGACAGAAATGCTGCTAGAGAAAATGATAGAAACAGCAGAGAAGAGTGGGATTGAAGGAAGGATCATAAATGTGTCTTCTGTGATCCATAGCTGGGTCAAGAGACATGCCTTTCGTTTCCACGACTTGCTCAATGGAACAAAGTATAATGGCACACGTGCATATTCCCAATCAAAATTAGCCAATATTTTGCATGCCAAGGAATTGGCCAGACAGCTTAAGGCAAGGAATACAAATGTAACAGTGAATGCAGTTCATCCGGGGATTGTGAAGACAGGAATTATCAGAGCTCATAAAGGCCTCATTACTGATTCAATGTTCTTCATTGCATCCAAGTTGCTGAAATCAACATCTCAGGGCGCAGCAACAACGTGTTATGTAGCAGTGAGTGGAAAAACACAAGGGTTGAGTGGGAAATACTTCGCAGATTGTAATGAGAGTAACTGCTCAAGTATAGCAAACGACGAATTTGAAGCTCAGAAGCTATGGAACAACACTCGAGCCTTGCTTCATAAACGACTGCGTCAAGCCTCCTCTTAA	996	0.4297	MKATLRYLAGTAGPSGYGSNSTAEQVTEDCSCFLSSHHVTALITGGTSGIGEETARVLAKRGVRVVIGARDMKKAREVRQNIQKETPNAEVIVLEIDLSSFASVQRFCSEFLALQLPLNILINNAGIFSQNLEFSEEKIEMTFATNYLGHFLLTEMLLEKMIETAEKSGIEGRIINVSSVIHSWVKRHAFRFHDLLNGTKYNGTRAYSQSKLANILHAKELARQLKARNTNVTVNAVHPGIVKTGIIRAHKGLITDSMFFIASKLLKSTSQGAATTCYVAVSGKTQGLSGKYFADCNESNCSSIANDEFEAQKLWNNTRALLHKRLRQASS	331

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g1738	331	PANTHER	RETINOL DEHYDROGENASE	14	321	-	-
	Lele22g1738	331	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	40	299	IPR036291	-
	Lele22g1738	331	PRINTS	Glucose/ribitol dehydrogenase family signature	166	182	IPR002347	-
	Lele22g1738	331	PRINTS	Glucose/ribitol dehydrogenase family signature	40	57	IPR002347	-
	Lele22g1738	331	PRINTS	Glucose/ribitol dehydrogenase family signature	230	247	IPR002347	-
	Lele22g1738	331	PRINTS	Glucose/ribitol dehydrogenase family signature	207	226	IPR002347	-
	Lele22g1738	331	PRINTS	Glucose/ribitol dehydrogenase family signature	116	127	IPR002347	-
	Lele22g1738	331	CDD	retinol-DH_like_SDR_c_like	40	315	-	-
	Lele22g1738	331	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	172	180	IPR002347	-
	Lele22g1738	331	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	116	127	IPR002347	-
	Lele22g1738	331	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	207	226	IPR002347	-
	Lele22g1738	331	Gene3D	-	35	327	-	-
	Lele22g1738	331	Pfam	short chain dehydrogenase	200	247	IPR002347	-
	Lele22g1738	331	Pfam	short chain dehydrogenase	40	181	IPR002347	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g1738	Lele-ChrLele22	22724530	22727301	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g1738	19	246	Acyl Lipid Metabolism Gene Families	AT1G63380	28.326	2.55e-14	70.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele22g1738	22	22724530	22727301	Lele17g1075	17	21237854	21241181	CCT
	Lele22g1738	22	22724530	22727301	Lele18g0466	18	2721505	2725005	CCT
	Lele22g1738	22	22724530	22727301	Lele19g0486	19	2752596	2755928	CCT
	Lele22g1738	22	22724530	22727301	Lele20g0970	20	15772583	15776078	CCT
	Lele22g1738	22	22724530	22727301	Lele22g1738	22	22724530	22727301	ECH
	Lele22g1738	22	22724530	22727301	Lele23g0244	23	1671886	1674520	hybridization
	Lele22g1738	22	22724530	22727301	Lele24g1706	24	22384087	22386867	hybridization