Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0466 ATGGGAGAGGGTACAGGGGGTGGTGGTGTTTCTTTGCCTTCGGGTCCAGACGCCAAGAAGAGGAGGGTCACCTATTTCTACGAATCCACCATCGGCGATTACTACTACGGCCAAGGCCATCCCATGAAACCCCATCGGATTCGCATGGCCCATAATCTCATCGTCCATTACTACCTCCATCGCCGCATGGAAATCAATCGTCCTTTCCCCGCCGCCCCCGAAGATATCCGCCGTTTTCACACCGACGAATACGTTGACTTCCTCTCCTCTGTAACGCCGGAGACCCTCGGTGAGAACACATTCTCTCGTCAGCTCAAGCGCTTCAATGTTGGCGAGGACTGTCCCGTCTTTGACGGCTTATTCAATTTTTGTCAGGCCTCTGCCGGTGGTTCCATTGGCGCCGCCGTCAAGTTGAACCGTGGCGATGCTGATATTGCCATCAACTGGGCTGGTGGTCTGCACCATGCTAAGAAGTCTGAGGCTTCTGGGTTTTGTTATGTCAATGATATTGTCCTCGGCATTCTTGAGCTGCTCAAGGTCCACAGGCGTGTATTATATGTTGACATTGATGTTCACCATGGAGATGGCGTTGAGGAAGCTTTCTATACAACTGATAGAGTGATGACAGTTTCTTTTCACAAGTTTGGGGATTTTTTCCCGGGCACTGGGCACATTAAAGATGTAGGAGCGGGCCTGGGGAAGAATTATGCTTTAAATGTCCCCTTGAATGATGGGATGGATGATGAGAACTTCTGTGGGTTGTTTCGCCCCATCATTCAGAAAGTCATGGAGGTGTATCAACCTGATGCAGTTGTTCTTCAATGTGGTGCTGATTCATTGTCCGGTGACAGGCTAGGTTGCTTCAATTTGTCTGTTAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTTTGATGGTCTTGGGTGGGGGAGGATATACAATTAGGAATGTTGCTCGTTGCTGGTGTTATGAGACAGCGGTGGCTGTAGGTGTTGAACCTGATAATCAGTTGCCTTACAATGAATATTATGAGTATTTTGGCCCAGACTACACTCTTCATGTTGATCCATGTAACATGGAGAACCTTAACTCACCAAAGGATATGGACAAAATGAGAATGACACTATTAGAACAGCTCACCAGACTTCCTCATGCGCCCAGTGTGCCTTTTCAGACAACACCATCTACATTTGAAGTCCCAGAAGAGGTGGAAGAGGATATGGATCGAAGACCAAAACGACGCATATGGAGTGGTGAAGATTATGATTCTGATCATGATGAAGATGTGAAGATTAGTTCAAAATACTCAAATATAAGGGATGTACCTGATGAGATGGAAGAAGAGAAGCCAGAAAGGCACCCTTCATCCTAA 1386 0.4711 MGEGTGGGGVSLPSGPDAKKRRVTYFYESTIGDYYYGQGHPMKPHRIRMAHNLIVHYYLHRRMEINRPFPAAPEDIRRFHTDEYVDFLSSVTPETLGENTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGLGKNYALNVPLNDGMDDENFCGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNQLPYNEYYEYFGPDYTLHVDPCNMENLNSPKDMDKMRMTLLEQLTRLPHAPSVPFQTTPSTFEVPEEVEEDMDRRPKRRIWSGEDYDSDHDEDVKISSKYSNIRDVPDEMEEEKPERHPSS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0466 461 Gene3D Histone deacetylase domain 19 394 IPR037138 -
Lele18g0466 461 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Lele18g0466 461 SUPERFAMILY Arginase/deacetylase 22 385 IPR023696 -
Lele18g0466 461 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Lele18g0466 461 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Lele18g0466 461 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Lele18g0466 461 Pfam Histone deacetylase domain 40 331 IPR023801 -
Lele18g0466 461 MobiDBLite consensus disorder prediction 408 461 - -
Lele18g0466 461 CDD HDAC_classI 26 333 - -
Lele18g0466 461 FunFam Histone deacetylase 19 398 - -
Lele18g0466 461 PANTHER HISTONE DEACETYLASE 2-RELATED 11 346 - -
Lele18g0466 461 MobiDBLite consensus disorder prediction 390 461 - -
Lele18g0466 461 PIRSF HDAC_I_euk 9 460 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0466 Lele-ChrLele18 2721505 2725005 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1763 21 25369626 25372323 Lele18g0466 18 2721505 2725005 CCT
Lele22g1738 22 22724530 22727301 Lele18g0466 18 2721505 2725005 CCT
Lele23g0244 23 1671886 1674520 Lele18g0466 18 2721505 2725005 CCT
Lele24g1706 24 22384087 22386867 Lele18g0466 18 2721505 2725005 CCT
Lele18g0466 18 2721505 2725005 Lele19g0486 19 2752596 2755928 hybridization
Lele18g0466 18 2721505 2725005 Lele20g0970 20 15772583 15776078 hybridization