LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1763	ATGCTCTTTCTTTGTGGTCGTAAGGGAGTGAAAGCGAGCAAAGGCATGAAGGCGACACTGAGATACTTAGCAGGAACGGCAGGGCCTAGTGGTTATGGCTCTAATTCAACAGCCGAGCAAGTCACTGAAGATTGCTCTTGCTTACTCTCTTCTCATCATCTAACTGCTCTCATCACAGGTGGGACATCTGGGATTGGAGCAGAAACAGCGAGAGTGTTGGCAAAGCGAGGAGTGAGGGTAGTGATTGGAGCGAGGGACATGAAGAAGGGGAGAGAAGTGAGACAGAATATTCAGAAAGAAACTCCGAACGCTGAGGTTATAGTGTTGGAAATCGATCTCAGTTCTTTCGCTTCTGTTCAGAGATTTTGTTCTGAGTTTTTGTCTCTTCAACTTCCCCTCAATATCCTCATAAACAATGCCGGAATATTCTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAGATGACATTTGCCACCAATTACTTGGGACATTTTTTGTTGACAGAAATGCTGCTAGAGAAAATGATAGAAACAGCAGAGAAGAGTGGAATCGAAGGAAGGATCATTAATGTGTCTTCTGTGATCCATAGCTGGGTCAAGAGACATGCCTTTCGTTTCCACGACTTGCTCCATGGAACGAAGTATAATGGCACACGCGCATATTCCCAATCAAAATTGGCCAATATTTTGCATGCCAAGGAATTGGCCAGGCAGCTTAAGGCAAGGAATGCAAATGTAACAGTGAATGCAGTTCATCCGGGGATTGTGAAGACAGGAATTATCAGAGCTCACAAAGGCCTCATAACGGATTCCCTGTTCTTCATTGCAGCGAAGTTGCTGAAATCCACATCTCAGGGCGCAGCAACAACTTGCTATGTGGCAGTGAGTGGAAAAACACAAGGGTTGAGTGGGAAATACTTGGCGGATTGTAATGAGAGTAACTGTTCAAGTTTAGCAAACGACGAATTTGAAGCTCAGAAGCTATGGAACAACACTCGAGCTTTGCTTCAAAAACGACTGCACCAAGCCTGTTCTTGA	1041	0.4476	MLFLCGRKGVKASKGMKATLRYLAGTAGPSGYGSNSTAEQVTEDCSCLLSSHHLTALITGGTSGIGAETARVLAKRGVRVVIGARDMKKGREVRQNIQKETPNAEVIVLEIDLSSFASVQRFCSEFLSLQLPLNILINNAGIFSQNLEFSEEKIEMTFATNYLGHFLLTEMLLEKMIETAEKSGIEGRIINVSSVIHSWVKRHAFRFHDLLHGTKYNGTRAYSQSKLANILHAKELARQLKARNANVTVNAVHPGIVKTGIIRAHKGLITDSLFFIAAKLLKSTSQGAATTCYVAVSGKTQGLSGKYLADCNESNCSSLANDEFEAQKLWNNTRALLQKRLHQACS	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1763	346	PRINTS	Glucose/ribitol dehydrogenase family signature	181	197	IPR002347	-
	Lele21g1763	346	PRINTS	Glucose/ribitol dehydrogenase family signature	55	72	IPR002347	-
	Lele21g1763	346	PRINTS	Glucose/ribitol dehydrogenase family signature	245	262	IPR002347	-
	Lele21g1763	346	PRINTS	Glucose/ribitol dehydrogenase family signature	222	241	IPR002347	-
	Lele21g1763	346	PRINTS	Glucose/ribitol dehydrogenase family signature	131	142	IPR002347	-
	Lele21g1763	346	PANTHER	RETINOL DEHYDROGENASE	29	336	-	-
	Lele21g1763	346	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	131	142	IPR002347	-
	Lele21g1763	346	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	222	241	IPR002347	-
	Lele21g1763	346	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	187	195	IPR002347	-
	Lele21g1763	346	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	55	314	IPR036291	-
	Lele21g1763	346	Gene3D	-	48	342	-	-
	Lele21g1763	346	Pfam	short chain dehydrogenase	215	262	IPR002347	-
	Lele21g1763	346	Pfam	short chain dehydrogenase	55	196	IPR002347	-
	Lele21g1763	346	CDD	retinol-DH_like_SDR_c_like	55	330	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1763	Lele-ChrLele21	25369626	25372323	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1763	34	261	Acyl Lipid Metabolism Gene Families	AT1G63380	27.897	2.60e-13	67.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1763	21	25369626	25372323	Lele17g1075	17	21237854	21241181	CCT
	Lele21g1763	21	25369626	25372323	Lele18g0466	18	2721505	2725005	CCT
	Lele21g1763	21	25369626	25372323	Lele19g0486	19	2752596	2755928	CCT
	Lele21g1763	21	25369626	25372323	Lele20g0970	20	15772583	15776078	CCT
	Lele21g1763	21	25369626	25372323	Lele21g1763	21	25369626	25372323	ECH
	Lele21g1763	21	25369626	25372323	Lele23g0244	23	1671886	1674520	hybridization
	Lele21g1763	21	25369626	25372323	Lele24g1706	24	22384087	22386867	hybridization