Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1239 ATGGCAATTGCACGAACGGGAGTCTATGTCGACGACTATTTGGAGTACGCGAGTACACTGCCTGCTGAGCTTCAGAGGTTGCTCAATACCATCAGAGAACTCGATGACCGATCCCAATCTATGATAAACCAGACGAGGCAGCAGACAAAGTACTGCCTAGGGTTGTCAGCACATGGCTATAAGAAGGGTTATCATAGCAGTGGCCATCATTATAATAACAATAATATGAATGAAGAAGATGACATTGCAATCGAGAAAATGAGAAAAGAAATTGAGGCAAATCAAGATAGTGCATTTAGTCTATGTACTGAGAAGGTTTTATTGGCAAGGCAAGCATATGACCTGATCGATAGCCATGTAAAGCGACTTGATGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCACCAGATGAACCAGCAATTCTTCCCCCATTGCCTCTAGTTCTTAAAAGCGAAAACCGCAAGTCCAATATGTATGGAACACCTCAATCAAAGAGAGTTGATTACCGGGATAGAGACTGGGATAGAGAGCGTGATAGGGACTTTGAGCTCATGCCTCCGCCAGGAAGCCATAAAAAGGATTATACAGCTCCTGTGGATTTTGATCAACCAATTGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTTGGTGATATGATTGCATGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCACTATGCATGTGTTGGCCTAACACCAGAGACAAGATTCAAGGGAAAGTGGTATTGCCCAACCTGCAAATTGCTTCCACAGTTCAAAGACAATGAAAATACCAAAGCTGTGACAGCGAGTTCAGCAATGGGAAGAAGTCTCAGTCCAGTAATCCGGCGAGAGCTTGCAAACCTTGACAAAGATGCGGACAGCCGCAAGTGTGCAATGAAAGCCCTGAAGTCATACGTGAAAGATTTGGATTTTAAGACCATTCCTATCTTCCTCGCCCAAGTTTCTGAAACCAAGGATACCGGCTCATTATCAGGAGAATTCACAATTTCACTCTATGAAGTTCTTGCTCGAGTTCATGGTGTCAAGATTGTTCCTATGATAGACAGCATCATGGCATCCATAGTACAAACCTTAGCTTCAAGTGCAGGGTCTTTCCCACTTCAGCAGGCTTGCTCAAAGGTGGTCCCAGCTATTGCAAGATATGGAATTGACCCCACAACCCCTGAAGACAGAAAGAGGCATATAATTCATTCCCTTTGTAAGCCACTTTCTGATTCCCTCACTTCTTCACATGAGAGCCTAGCTTCAGGAGCATCCCTTTGCTTAAAGGCTCTTGTGGATTCAGATAACTGGAAGTTTGCTTCAGATGACGTAGTCAATAGGGTCTGCCTGAATGTTGCTGTAGCTTTAGAGGGGAGGTCCACCCAGAATAACTCCCATTTGGGTTTGGTAATGGCCTTAGCTAAACGCAATGCTTTGATTGTTGAAGCATATGCAAGATTGCTTATACAATCTGGATTGAGAATATTGAATGCTGGGCTTATGGAGGTGAATTCTCAGAAGAGATTGTCTGCCATTCAAATGGTAAATTTCTTGATGAAGTGTCTAGACCCTCGAAGCATATTCTCAGAACTCGATTTGATAATTCTAGAGATGGAGAAGTGCCAGTCTGATAAAATGGCTTATGTGAAAGGTGCTGCATTTGAAGCTTTGCAAACTGCTAAGAGAATTGCAGCTGACAAGAAATCAAGATGTATAAGAAGTCCGGGCTCAGTGACTGGCTCAAATTTTAGCAAGGGAGACCACAATGAAGGGGAGAACTTTTCTTGTCAAGGAGAGCATACTCCTAGATCTATTTCCCCAGAATCACGGACTCTGGACTTCTTTACAGGATATGAATCAGTGAGCGAGTCTCCCATTGCAATGAGCCAAACTTCTCAGACTTCGAACTACGAGCGTCGAAGTGTAAATAGGAAGCTTTGGAGCCAGGAAAATGCAGGAGTTGATGTGTCTCTCAAGGATGGCCTCTTTTCAGAGGTTGTGAAGAGAAATGATATCTCAAAAAAATGGTTAGAGCAATCTGCGAATCATGAGGTTTCAACAGAGGAGTTTGCTGGATTCATGCATCAGAATCCTAGGTTTGGAGTATCCAGAAGCACCACCACAAGTCCGCTGAGGCCTCGAGCACAGGTTAATGTAGACAACATAAAAATCTTCAAGACTCCTAGAAAGCTCATTCAGTCTCTGCAAGACCCTTTTGATGTGACTTCCGGTAGCTCTTCCAGCAGCTCTGAGAAACAAAACAGACGGTTTAGGAGTTTATCCCCAGGCAATACTGAGTGTAGTCCAACATCTGAATGTGACCAGAATGGTTTCTCACATGAAAATAATGATTCTAAAGAGAATGGAAGCTTATCATATGATGATGGTTATAATGATGTACAGATACAAGGTGGTCATGAGTCAGTCTCAATAACAAATGAGTTTTCTGGTGATGTTGACATGCAGATGCAACCTGAGGTAGTTACCAGAAGTGAAACTAGAGCTCAGAGAATTGGCATGGAAAAAAATCTGCGAAGGGCAACGTTCAAATTTGTTTGTGGTCTCTCGTTTGCTCTACTTGCAGTGGCTACACCTCTTGTATGGATCAACGGTCAGGACGAAGGGCATTATCTTGTCCCGACATAA 2688 0.4315 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINQTRQQTKYCLGLSAHGYKKGYHSSGHHYNNNNMNEEDDIAIEKMRKEIEANQDSAFSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPLVLKSENRKSNMYGTPQSKRVDYRDRDWDRERDRDFELMPPPGSHKKDYTAPVDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQFKDNENTKAVTASSAMGRSLSPVIRRELANLDKDADSRKCAMKALKSYVKDLDFKTIPIFLAQVSETKDTGSLSGEFTISLYEVLARVHGVKIVPMIDSIMASIVQTLASSAGSFPLQQACSKVVPAIARYGIDPTTPEDRKRHIIHSLCKPLSDSLTSSHESLASGASLCLKALVDSDNWKFASDDVVNRVCLNVAVALEGRSTQNNSHLGLVMALAKRNALIVEAYARLLIQSGLRILNAGLMEVNSQKRLSAIQMVNFLMKCLDPRSIFSELDLIILEMEKCQSDKMAYVKGAAFEALQTAKRIAADKKSRCIRSPGSVTGSNFSKGDHNEGENFSCQGEHTPRSISPESRTLDFFTGYESVSESPIAMSQTSQTSNYERRSVNRKLWSQENAGVDVSLKDGLFSEVVKRNDISKKWLEQSANHEVSTEEFAGFMHQNPRFGVSRSTTTSPLRPRAQVNVDNIKIFKTPRKLIQSLQDPFDVTSGSSSSSSEKQNRRFRSLSPGNTECSPTSECDQNGFSHENNDSKENGSLSYDDGYNDVQIQGGHESVSITNEFSGDVDMQMQPEVVTRSETRAQRIGMEKNLRRATFKFVCGLSFALLAVATPLVWINGQDEGHYLVPT 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1239 895 SMART ING_2 9 130 IPR024610 -
Lele14g1239 895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 267 IPR013083 -
Lele14g1239 895 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Lele14g1239 895 MobiDBLite consensus disorder prediction 750 809 - -
Lele14g1239 895 CDD ING_plant 17 127 - -
Lele14g1239 895 FunFam PHD finger protein ING 210 268 - -
Lele14g1239 895 MobiDBLite consensus disorder prediction 592 622 - -
Lele14g1239 895 CDD PHD_ING 218 265 - -
Lele14g1239 895 Gene3D - 5 128 - -
Lele14g1239 895 FunFam protein SINE1 isoform X1 287 599 - -
Lele14g1239 895 ProSiteProfiles Zinc finger PHD-type profile. 216 268 IPR019787 -
Lele14g1239 895 PANTHER INHIBITOR OF GROWTH PROTEIN 2 272 IPR028651 -
Lele14g1239 895 SUPERFAMILY ARM repeat 296 573 IPR016024 -
Lele14g1239 895 Coils Coil 24 44 - -
Lele14g1239 895 SUPERFAMILY FYVE/PHD zinc finger 202 266 IPR011011 -
Lele14g1239 895 SMART PHD_3 218 266 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1239 Lele-ChrLele14 21641592 21649221 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0503 06 3057560 3060948 Lele14g1239 14 21641592 21649221 CCT
Lele05g0678 05 4005229 4011441 Lele14g1239 14 21641592 21649221 CCT
Lele14g1239 14 21641592 21649221 Lele15g1110 15 6435539 6440063 hybridization
Lele14g1239 14 21641592 21649221 Lele16g1141 16 6401908 6403817 hybridization