Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1905 ATGGTACGGGGATCACTCAACAATCTCATTTCTCGTTCACTCTCCCTCGCCGGAAAATGGCAACAACAGCAGCTCCGCCGCCTCAACGTTCATGAATACCAGGGATCTGAGTTAATGAGCAAACACGGAATCAATGTTCCGAGAGGCGTAGCTGTTTCATCTGTTGAAGAAGTCAAAAAGGCTATCAAGGACGTATTTCCTAACGAGAATGAGTTGGTGGTTAAAAGTCAAATTTTGGCTGGTGGACGAGGTTTGGGAACATTTAAAAGCGGTCTCAAGGGTGGAGTTCACATTGTTAAGGCCGATCAGGCTGAAGACATAGCTGGGAAGATGCTTGGGGAGATACTGGTTACAAAACAAACTGGCCCTCAGGGAAAACTTGTCAGCAAGGTTTACTTGTGTGAGAAGCTGTCACTCGTGAACGAGATGTACTTTGCTATAACTTTAGATCGCAAGACTGCTGGTCCTCTGATAATTTCTTGTAGAAAGGGAGGAACCAGCATCGAAGACCTGGCAGAGAAATTCCCTGACATGATTGTAAAGGTTCCTGTTGATGTTTTTGAGGGACTTACTGATGAAGGTGCTGCCAAGGTTGTTGATGGGTTGGCTCCCAAAGTGGCAGATAGAAATAAATCAATTGAACAAGTGAAGAATTTATATAAACTATTTTGTCAGTGTGACTGCACTCTTTTGGAAATCAATCCCATAGCGGAGACTGCTGACAACCACTTGGTGGCTGCTGATGCCAAGTTGAACTTTGATGATAATGCAGCTTACCGTCAGAAGGAGATATTTGCTCTCCGGGATACAACTCAAGAGGATCCTCGAGAGGTTGCTGCATCAAAGGCAGATTTAAATTATATTGGGTTAGATGGAGAAATTGGTTGCATGGTGAACGGAGCAGGTTTAGCAATGTCCACAATGGACATAATTAAGTTGCATGGGGGTACGCCTGCTAATTTTTTGGATGTTGGTGGGAATGCATCTGAAAACCAGGTGGTTGAAGCATTTAAAATTTTGACAGCTGATGACAAGGTGAAGGCTATTTTGGTTAACATATTCGGTGGCATAATGAAGTGTGATATCATAGCAAGCGGAATTGTCAATGCTGCTAAACAGGTTGCACTAAAAGTACCTGTAGTAGTTCGCCTTGAAGGCACCAATGTGGATATAGGAAAAAGAATTCTAAAGGAAAGTGGCATGACATTAATAACGGCAGATGATTTGGATGATGCCGCCAAGAAAGCAGTTAAAGCAGCTTACAACTGA 1269 0.4326 MVRGSLNNLISRSLSLAGKWQQQQLRRLNVHEYQGSELMSKHGINVPRGVAVSSVEEVKKAIKDVFPNENELVVKSQILAGGRGLGTFKSGLKGGVHIVKADQAEDIAGKMLGEILVTKQTGPQGKLVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIISCRKGGTSIEDLAEKFPDMIVKVPVDVFEGLTDEGAAKVVDGLAPKVADRNKSIEQVKNLYKLFCQCDCTLLEINPIAETADNHLVAADAKLNFDDNAAYRQKEIFALRDTTQEDPREVAASKADLNYIGLDGEIGCMVNGAGLAMSTMDIIKLHGGTPANFLDVGGNASENQVVEAFKILTADDKVKAILVNIFGGIMKCDIIASGIVNAAKQVALKVPVVVRLEGTNVDIGKRILKESGMTLITADDLDDAAKKAVKAAYN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1905 422 Pfam CoA-ligase 297 417 IPR005811 GO:0003824
Lele13g1905 422 Gene3D - 48 139 IPR013815 GO:0005524
Lele13g1905 422 FunFam Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial 48 139 - -
Lele13g1905 422 ProSiteProfiles ATP-grasp fold profile. 36 262 IPR011761 GO:0005524|GO:0046872
Lele13g1905 422 FunFam Succinate--CoA ligase [ADP-forming] subunit beta 132 272 - -
Lele13g1905 422 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 22 420 IPR005809 GO:0006099
Lele13g1905 422 Hamap Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 28 421 IPR005809 GO:0006099
Lele13g1905 422 TIGRFAM sucCoAbeta: succinate-CoA ligase, beta subunit 29 420 IPR005809 GO:0006099
Lele13g1905 422 FunFam Succinate--CoA ligase [ADP-forming] subunit beta 275 422 - -
Lele13g1905 422 PIRSF SucCS_beta 28 422 IPR005809 GO:0006099
Lele13g1905 422 Gene3D - 275 421 IPR016102 -
Lele13g1905 422 Gene3D - 28 272 - -
Lele13g1905 422 SUPERFAMILY Succinyl-CoA synthetase domains 274 419 IPR016102 -
Lele13g1905 422 Pfam ATP-grasp domain 29 237 IPR013650 -
Lele13g1905 422 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 28 273 - -
Lele13g1905 422 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 292 316 IPR017866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1905 Lele-ChrLele13 26765390 26769149 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1905 13 26765390 26769149 Lele05g1364 05 8554221 8569824 CCT
Lele13g1905 13 26765390 26769149 Lele06g1225 06 7726175 7735254 CCT
Lele13g1905 13 26765390 26769149 Lele07g1424 07 8622719 8633613 CCT
Lele13g1905 13 26765390 26769149 Lele08g1221 08 7694351 7703571 CCT
Lele13g1905 13 26765390 26769149 Lele15g0503 15 2952971 2956724 hybridization
Lele13g1905 13 26765390 26769149 Lele16g0524 16 2895514 2898938 hybridization