Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1181 ATGGCTTCAGATTCCAATTCAAACCTTAAAATCATCGTCGAAAGAAACCCTCCTCAGTCTCGCCTTGCCACTCTCAATGTCACCTGCTGGCCCAAAAGATGGGGTTGTTCACCAGGGAAGTACCAGTTGAAGTTTGATGCAGAAGAGACATGTTATCTGCTGAAAGGGAAGGTGAAGGCATACCCAAAAGGTTCATCGGAGTTTGTGGAGTTCGGTGCCGGCGACCTCGTGATTATCCCTAAAGGTCTCAGTTGTACCTGGGACGTTTCTCTCGCCGTCGATAAATATTACAAATTTGAGTCTTCTTCTTCTTCATCTTCTTCGGCATCTTAG 333 0.4625 MASDSNSNLKIIVERNPPQSRLATLNVTCWPKRWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVIIPKGLSCTWDVSLAVDKYYKFESSSSSSSSAS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1181 110 PANTHER OS04G0445200 PROTEIN 5 100 - -
Lele08g1181 110 SUPERFAMILY RmlC-like cupins 32 90 IPR011051 -
Lele08g1181 110 CDD cupin_TM1112-like 30 99 - -
Lele08g1181 110 Pfam EutQ-like cupin domain 30 97 IPR008579 -
Lele08g1181 110 Gene3D Jelly Rolls 2 99 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1181 Lele-ChrLele08 7456149 7456630 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1890 13 26692675 26693921 Lele08g1181 08 7456149 7456630 CCT
Lele14g1826 14 25035554 25035901 Lele08g1181 08 7456149 7456630 CCT
Lele15g0519 15 3024291 3030492 Lele08g1181 08 7456149 7456630 CCT
Lele16g0538 16 2982268 2987641 Lele08g1181 08 7456149 7456630 CCT
Lele08g1181 08 7456149 7456630 Lele08g1181 08 7456149 7456630 ECH