Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1826 ATGATGGTCAAACCAACAATACAGTTCATCCAAGGAACAGACGAGCTAACAGTACCAGATGTAAGGCTTACTAAATCAAGAGATGGAACAAATGGCATGGCTATCTTCAGGTTTGATCAGCCCTCAGTTTTTGATTCTTCTGGTGAAGTTGGTGACATCACAGGTTTTTACATGATTGATGACGAAGGTGTCCTTCAGTCGGTTGATGTGAGTGCCAAATTTATCAATGGAAAGCCTTCAGGAATTGAAGCCAAGTACGTAATGCGGACTCCACGCGAGTGGGATAGATTCATGAGATTCATGGAGCGCTACTCTAATGCTAATGGTTTGCAATTCGTTAAAAATTGA 348 0.4167 MMVKPTIQFIQGTDELTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSGEVGDITGFYMIDDEGVLQSVDVSAKFINGKPSGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1826 115 Pfam Psb28 protein 7 112 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele14g1826 115 PANTHER - 1 115 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele14g1826 115 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 7 113 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele14g1826 115 FunFam Photosystem II reaction center Psb28 protein 5 115 - -
Lele14g1826 115 Hamap Photosystem II reaction center Psb28 protein [psb28]. 4 113 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele14g1826 115 Gene3D Photosystem II Psb28 5 115 IPR038676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1826 Lele-ChrLele14 25035554 25035901 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1826 14 25035554 25035901 Lele07g1378 07 8383810 8385154 CCT
Lele14g1826 14 25035554 25035901 Lele08g1181 08 7456149 7456630 CCT
Lele14g1826 14 25035554 25035901 Lele15g0519 15 3024291 3030492 hybridization
Lele14g1826 14 25035554 25035901 Lele16g0538 16 2982268 2987641 hybridization