Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0538 ATGCAGGGCGATTCTTCTCCCGATTCGATGCTCACGGAGCCTAAAGACGATAATTTAGCCCTTTCTTCTGAGGACTCGTCTTGCCCTCATGAGTCCGAGCTTGAATTGGGTCTTGGCTTAAGCCTTTATCATCCTCCGGTCAAGTCTCAGCCACCTCCGACGACTCAGTATGCGAGAATTTTGACGGCTATGGATTTTTCTTCATCCTCCTCGTCCTCTGCTTCCTCTTCCTCTCCTAACGCGACAGCTGGCACCAAGAGGGCTGCTGATTTTCTTGTCCCTGCAAACGGTCCTAGGTTTGATCAGCCCTCAGTTTTTGATTCTTCTGGTGAAGTTGGTGACATCACAGGTTTTTACATGATTGATGACGAAGGTGTCCTTCAGTCGGTTGATGTGAGTGCCAAATTTATCAATGGAAAGCCTTCAGGAATTGAAGCCAAGTATGTAATCCGGACTCCACGCGAGTGGGATAGATTCATGAGATTCATGGAGCGCTACTCTAATGCTAATGGTTTGCAATTCGTTAAAAATTGA 534 0.47 MQGDSSPDSMLTEPKDDNLALSSEDSSCPHESELELGLGLSLYHPPVKSQPPPTTQYARILTAMDFSSSSSSSASSSSPNATAGTKRAADFLVPANGPRFDQPSVFDSSGEVGDITGFYMIDDEGVLQSVDVSAKFINGKPSGIEAKYVIRTPREWDRFMRFMERYSNANGLQFVKN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0538 177 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 99 175 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele16g0538 177 Gene3D Photosystem II Psb28 98 177 IPR038676 -
Lele16g0538 177 Pfam Psb28 protein 99 174 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele16g0538 177 Coils Coil 177 177 - -
Lele16g0538 177 MobiDBLite consensus disorder prediction 68 87 - -
Lele16g0538 177 MobiDBLite consensus disorder prediction 1 34 - -
Lele16g0538 177 PANTHER - 99 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele16g0538 177 MobiDBLite consensus disorder prediction 68 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0538 Lele-ChrLele16 2982268 2987641 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0538 16 2982268 2987641 Lele07g1378 07 8383810 8385154 CCT
Lele16g0538 16 2982268 2987641 Lele08g1181 08 7456149 7456630 CCT
Lele13g1890 13 26692675 26693921 Lele16g0538 16 2982268 2987641 hybridization
Lele14g1826 14 25035554 25035901 Lele16g0538 16 2982268 2987641 hybridization