Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1890 ATGGCAACTCTGCACTCTCTAGCATTGTCGTCTCCGCTCCCTAACTCTCTCCAGAAGCCCCGTTCTTTCTTAGTCTCATCTTTGGCTGTTCATCGAAGTACACTTTCCTCATTCAATGGCCAATCTTTACCCCTGCCACGTCTGAGGCTGCCTTCATTAGCAAAAAATCCTCCAACAAGCGGACCCATTATAATGATGGTCAAACCAACTATACAGTTCATCCAAGGAACAGACGAGCTAACAGTACCAGATGTAAGGCTTACTAAATCAAGAGATGGAACAAATGGCATGGCTATCTTCAGGTTTGATCAGCCTTCAGTTTTTGATTCTTCTGGTGAAGTTGGTGACATCACAGGTTTTTTCATGATTGATGAGGAAGGTGTCCTTCAGTCGGTTGATGTGAGTGCCAAATTTATCAATGGAAAGCCTTCAGGAATTGAAGCCAAGTATGTAATGCGGACTCCACGCGAGTGGGATAGATTCATGAGATTCATGGAGCGCTACTCTAATGCTAATGGCTTGCAATTCGTTAAAAATTGA 540 0.437 MATLHSLALSSPLPNSLQKPRSFLVSSLAVHRSTLSSFNGQSLPLPRLRLPSLAKNPPTSGPIIMMVKPTIQFIQGTDELTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSGEVGDITGFFMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1890 179 FunFam Photosystem II reaction center Psb28 protein 69 179 - -
Lele13g1890 179 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 71 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele13g1890 179 Hamap Photosystem II reaction center Psb28 protein [psb28]. 68 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele13g1890 179 PANTHER - 1 179 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele13g1890 179 Pfam Psb28 protein 71 176 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele13g1890 179 Gene3D Photosystem II Psb28 69 179 IPR038676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1890 Lele-ChrLele13 26692675 26693921 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1890 13 26692675 26693921 Lele07g1378 07 8383810 8385154 CCT
Lele13g1890 13 26692675 26693921 Lele08g1181 08 7456149 7456630 CCT
Lele13g1890 13 26692675 26693921 Lele15g0519 15 3024291 3030492 hybridization
Lele13g1890 13 26692675 26693921 Lele16g0538 16 2982268 2987641 hybridization