Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0519 ATGCCGATCAACATTCAAGTCAAAACTGCTGTTGTGTGTCGGCAGAGTAGCACACAGGATGATTTTACAAGGGGATTGGAGGAGGAGGCGTCGTGTGGTAGAAAGTGTCTCCTGGTGAGTGCGCAAAGTGGGGGAAAGTATCATCAGGAATTGGGTGATTCTTCTCCCGACTCGATGCTCACGGATTCTAAAGACGATAATTTGGCCCTTTCTTCTGAGGACTCGTCTTGCCCTCATGAGTCCGAGCTTGAATTGGGTCTTGGCTTGAGCCTTTCTCATCTTCCGGTCAAGTCTCATCCACCTCCGACGACTCATTATGCTAGAATTTTGACGGCCATGGATTTTTCTTCATCCTCTGCCTCCTCTTCCTCTCCTAACGCGACAGCTGGCACCAAGAGAGCTGCTGATTCTCTTGTCCCTGCAAACGGTCCTAGTCAAGTTGTTGGATGGCCTCCTCTTCGAGCATATAGAATGAACAGCTTTAATAATAATCACTCAAAATCTCCAGCCACTGAAGCTAAGAGTAATCTAACAACTGCAAGGAAGATTACTGACAATGGCAGTAATAAAAACAACAGTACTGCCAAAGAAAATACACACATCAGGAGATCTCTATTTGTGAAGGTAAATATGGATGGGACACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCTTATGAAACCTTGGCGCTTACTTTGGAGGATATGTTTAATGAACCAACTCCAGTTACCAAAGCTTTCTCTTACGCTCTCTCACATTTCTCTCCTCTCCCCGCAATGGCAACTCTTCACTCTCTTGCATTGTCGTCTCCGCTCCCTAACTCTCTCCAGAAGCCCCGTTCTTTCTTTGTCTCATCTTTGGCTGTTCATCGAAGTACACATTCCTCATTCAATGGCCAATCTTTACCCCTGCCACGTCTGAGGCTGCCTTCGTTAGCAAAAAATCCTCCAACACGCAGACCCATTATAATGATGGTTAAACCAACTATACAGTTCATCCAAGGAACAGACGAGCTAACAGTACCAGATGTAAGGCTTACTAAATCAAGAGATGGAACAAATGGCATGGCTATCTTCAGGTTTGATCAGCCTTCAGTTTTTGATTCTTCTGGTGAAGTTGGTGACATCACAGGTTTTTTCATGATTGATGAGGAAGGTGTCCTTCAGTCAGTTGATGTGAGTGCCAAATTTATCAATGGAAAGCCTTCAGGAATTGAAGCCAAGTATGTAATGCGGACTCCACGCGAGTGGGATAGATTCATGAGATTCATGGAGCGCTACTCTAATGCTAATGGTTTGCAATTCGTTAAAAATTGA 1323 0.4452 MPINIQVKTAVVCRQSSTQDDFTRGLEEEASCGRKCLLVSAQSGGKYHQELGDSSPDSMLTDSKDDNLALSSEDSSCPHESELELGLGLSLSHLPVKSHPPPTTHYARILTAMDFSSSSASSSSPNATAGTKRAADSLVPANGPSQVVGWPPLRAYRMNSFNNNHSKSPATEAKSNLTTARKITDNGSNKNNSTAKENTHIRRSLFVKVNMDGTPIGRKVDLSAHSSYETLALTLEDMFNEPTPVTKAFSYALSHFSPLPAMATLHSLALSSPLPNSLQKPRSFFVSSLAVHRSTHSSFNGQSLPLPRLRLPSLAKNPPTRRPIIMMVKPTIQFIQGTDELTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSGEVGDITGFFMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKN 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0519 440 ProSiteProfiles PB1 domain profile. 204 294 IPR000270 GO:0005515
Lele15g0519 440 MobiDBLite consensus disorder prediction 117 131 - -
Lele15g0519 440 Pfam AUX/IAA family 120 243 IPR033389 -
Lele15g0519 440 PANTHER - 262 440 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele15g0519 440 FunFam Photosystem II reaction center Psb28 protein 330 440 - -
Lele15g0519 440 MobiDBLite consensus disorder prediction 54 76 - -
Lele15g0519 440 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 332 438 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele15g0519 440 Pfam Psb28 protein 332 437 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele15g0519 440 Gene3D Photosystem II Psb28 330 440 IPR038676 -
Lele15g0519 440 Hamap Photosystem II reaction center Psb28 protein [psb28]. 329 438 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Lele15g0519 440 MobiDBLite consensus disorder prediction 117 140 - -
Lele15g0519 440 MobiDBLite consensus disorder prediction 46 79 - -
Lele15g0519 440 Gene3D - 199 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0519 Lele-ChrLele15 3024291 3030492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele15g0519 AUX_IAA 3.7e-28 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0519 15 3024291 3030492 Lele07g1378 07 8383810 8385154 CCT
Lele15g0519 15 3024291 3030492 Lele08g1181 08 7456149 7456630 CCT
Lele13g1890 13 26692675 26693921 Lele15g0519 15 3024291 3030492 hybridization
Lele14g1826 14 25035554 25035901 Lele15g0519 15 3024291 3030492 hybridization