Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0978 ATGTCTGCAATAGCGGCTTCCTCCCATATAATCTGCAGAGAGAATTACCAGCATCCGTGGTTGATCAGCAGCGGAGGAACTAATTCGTTATCGTTTAAGACTTCGACTGGGACTAGTTGGATTGAACGCAGAAAGAAGGAAGGAGAAGGGAGGAGAATAGGAAGGAGGAATGCACGAGTAGAAGCGCTTTGGCCAGATCTGTCGAGACCCACTGTAATTGAGATGGAACCAATCACGGATTCTGATCATCTCGATCAAATTCTTCTAAACGCTCAGCAAAATTCCCAGCCCATTCTCATCGATTGGATGGCTGCTTGGTGCAGGAAATGTATATATTTGAAGCCCAAGTTGGAAAAGCTGGCCGCTGAGTATCATAAGAAGCTCAAATTTTATAGTGTGGATGTTAATAAAGTACCTCAATCGCTAGTTAAGCGTGGTAACATCTCTAAAATGCCAACGATTCAGCTGTGGAAAGACGGAGAGATGAAGGCTGAAGTGATTGGTGGACACAAGGCCTGGATGGTGATTGAAGAAGTGAGAGAAATGATCCAAAACTCTGCATATCAATGGCAAGCCTTGCAATAG 585 0.4444 MSAIAASSHIICRENYQHPWLISSGGTNSLSFKTSTGTSWIERRKKEGEGRRIGRRNARVEALWPDLSRPTVIEMEPITDSDHLDQILLNAQQNSQPILIDWMAAWCRKCIYLKPKLEKLAAEYHKKLKFYSVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWMVIEEVREMIQNSAYQWQALQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0978 194 PANTHER THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC 31 187 IPR044253 GO:0009570
Lele07g0978 194 CDD TRX_family 88 184 - -
Lele07g0978 194 Gene3D Glutaredoxin 72 185 - -
Lele07g0978 194 SUPERFAMILY Thioredoxin-like 61 184 IPR036249 -
Lele07g0978 194 FunFam Thioredoxin 71 188 - -
Lele07g0978 194 ProSiteProfiles Thioredoxin domain profile. 58 188 IPR013766 -
Lele07g0978 194 Pfam Thioredoxin 92 173 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0978 Lele-ChrLele07 5873592 5874729 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0978 07 5873592 5874729 Lele13g1564 13 24738013 24739245 CCT
Lele07g0978 07 5873592 5874729 Lele14g1487 14 23120613 23121844 CCT
Lele07g0978 07 5873592 5874729 Lele15g0859 15 4986067 4987298 CCT
Lele07g0978 07 5873592 5874729 Lele16g0877 16 4946692 4947923 CCT
Lele07g0978 07 5873592 5874729 Lele07g0978 07 5873592 5874729 ECH
Lele05g0940 05 5789913 5791025 Lele07g0978 07 5873592 5874729 hybridization
Lele06g0807 06 4953944 4960077 Lele07g0978 07 5873592 5874729 hybridization