Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1492 ATGCAGGCATCCAGCGAAAGAGGAAATGTAGAGTGCAACAATTCTAGGATTTACGAGGGGTTTCCCATCCCCCATCACCCATCCCAAGGAGGAGCATTCTGCACAGAGTCTCATCGGCGACCGACACCCGCGCGGCCGGTTCAAATCATACGGGCAGGAGCTGGATGGTCTTCATTTTTATTTGCCGTCATTGCCATCAATAAATGGAAAGAAGAAGGCAACACGGCTCGCAAATACGAGCTCAATCGTATCGTTCGCGAGCTCCGTAAGCTCAAGCGGTACAAACACGCTCTCGAGATCTGTGAGTGGATGACCTCACAGCCAGACATCAAGCTACTGCCAGGGGACTATGCTGTCCACTTGGACTTGATAGCAAAAGTCCAAAACAATTTGGCTGACAAAGCTGAAGCTCTCATGTTAAAAATGTCAGAATGTGGTCTCTTGAAAAATCCTCTTCCTTATAACCACATGCTATCTCTCTACTTGTCAAATGGGAAATTTGAAAAGTTCCATGACACCATTCAGGAGCTAAAGAAGAACATGTCACCAGATGTTGTAACTTTTAATTTGTGGTTAACTGTTTGTGCTTCACAGGATGATGTTGAAGCTGCAGAAAGAGTTTTCCTTGAGCTGAAGAAGGCAAAATTAGATCCAGACTGGGTTACGTATAGTACATTAGCCAATTTATACATTAAAAATGCATTGCCTGAAAAAGCAGCATCTACTTTGAAAGAGATGGAGAGCAGAACCTCAAGGAAAAGTCGAGTTGCATATCCTTCTCTCCTTAGCTTGCATACAAACATGGGAAATAAGGATGAAGTTTTTCGAATATGGAAGAAGATGAAATCATGCTTTCGCAAAATGAATGATGCTGAGTACACTTGTATGATATCATCACTTGTGAGGCTCAGTGAATTTACAAAAGCTGAGAACATTTATCAGGAATGGGAGTCAGTTACTGGGACCAAAGATGTCAGAGTTCCAAATATACATCTTGCTTCATACATTAACCGAGACCAGATGGAAACGGCTGAAAACTTTTTCAATCAATTTGTGCAAAAAGGCATAGATCCTTGCTACACTACGTGGGAGCTATTTACTTGGGGTCATGTGGCTTCAGAGTTTGGATATTTAGAGGAAGTTGACTTAGGTTGCAAAGATTTCTGCATGCTTTTTGGTTTGATAGATTCTCGGCCAAGCAAAGAGAACCTGCCTTATGCAAAATTCTTCGGTTCATTGTTTGAGACTGTAGAATATCGCTCGGAGAGCTGCCTTGCAGAGCATTGCGCTTTACTTTCTCCTGATCATGCACTGAATGGATCTGTTCCTTTTAAGAATGACTTTCGAGCTGAATTGAACTACATATTAGCTACAAATTACTTGGGTACATATGAGGCCCTGCCACCAAAATCATCATCAACAGAGTCACCACAAATCTTCAGTACAACCTCAGCATTCCTTGCATTACACAAAAGTCTAAAGTACTCAAGATCATCATCACATCAGAGGCCGAAACTAGCCAATGATAGATATGGAATGCAAGCGATTTTCCTGGAATCTGGGCAGAGATCGTGTGGAACAGGCGTATTCTTACCCCAAACAGCAGGCTCAAGCTTCCAAACTCGCAAGAAGAAGCCAGGCTGTGCTCCTGTGCTGCTCCCAAACCGAGTGATTCGAGCTCTGAATCTCAACGTTCACACGTTAGGCTTGCAAATTTCACCCCGCCAAGACCCAAAATATGAGCCCAGATGTGGAGAAGAATTCAATAAATCAGGCAAGAAGAAATATGAAAAGAAAAATGTGTCAAAGCAAGATGATGGGGGCGTTGACCAGAGTCGCTGCCCAGCTAGGATATTTCTTCCAAAGGAATGGACTTACTAA 1881 0.4301 MQASSERGNVECNNSRIYEGFPIPHHPSQGGAFCTESHRRPTPARPVQIIRAGAGWSSFLFAVIAINKWKEEGNTARKYELNRIVRELRKLKRYKHALEICEWMTSQPDIKLLPGDYAVHLDLIAKVQNNLADKAEALMLKMSECGLLKNPLPYNHMLSLYLSNGKFEKFHDTIQELKKNMSPDVVTFNLWLTVCASQDDVEAAERVFLELKKAKLDPDWVTYSTLANLYIKNALPEKAASTLKEMESRTSRKSRVAYPSLLSLHTNMGNKDEVFRIWKKMKSCFRKMNDAEYTCMISSLVRLSEFTKAENIYQEWESVTGTKDVRVPNIHLASYINRDQMETAENFFNQFVQKGIDPCYTTWELFTWGHVASEFGYLEEVDLGCKDFCMLFGLIDSRPSKENLPYAKFFGSLFETVEYRSESCLAEHCALLSPDHALNGSVPFKNDFRAELNYILATNYLGTYEALPPKSSSTESPQIFSTTSAFLALHKSLKYSRSSSHQRPKLANDRYGMQAIFLESGQRSCGTGVFLPQTAGSSFQTRKKKPGCAPVLLPNRVIRALNLNVHTLGLQISPRQDPKYEPRCGEEFNKSGKKKYEKKNVSKQDDGGVDQSRCPARIFLPKEWTY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1492 626 Pfam PPR repeat family 183 228 IPR002885 -
Lele05g1492 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Lele05g1492 626 Pfam PPR repeat 154 179 IPR002885 -
Lele05g1492 626 Pfam PPR repeat 293 317 IPR002885 -
Lele05g1492 626 PANTHER OS12G0527900 PROTEIN 64 128 - -
Lele05g1492 626 MobiDBLite consensus disorder prediction 586 606 - -
Lele05g1492 626 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Lele05g1492 626 MobiDBLite consensus disorder prediction 586 612 - -
Lele05g1492 626 Gene3D Tetratricopeptide repeat domain 255 382 IPR011990 GO:0005515
Lele05g1492 626 Gene3D Tetratricopeptide repeat domain 78 254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1492 Lele-ChrLele05 9555996 9562512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1492 60 370 EF-hand Containing Proteins AT1G02150 35.362 2.53e-68 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2005 13 27382528 27390686 Lele05g1492 05 9555996 9562512 CCT
Lele14g1940 14 25715965 25718080 Lele05g1492 05 9555996 9562512 CCT
Lele15g0400 15 2298563 2300211 Lele05g1492 05 9555996 9562512 CCT
Lele16g0422 16 2278952 2280985 Lele05g1492 05 9555996 9562512 CCT
Lele05g1492 05 9555996 9562512 Lele07g1553 07 9574213 9576139 hybridization
Lele05g1492 05 9555996 9562512 Lele08g1343 08 8581144 8584131 hybridization