Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0400 ATGGACGGGTTCGCCGAGTTACCTTTCAAGGGGAACCCCGCAGCAGTGTGCCTATTAGAGGAAGAGAGGGATGATAAGTGGATGCAAGCAGTAGCCGCTGGGTTCAATGTCTCGGAGACCGGTTACTTGACTCGAATTTCTGAGTCAGAGGGCCCAGCCAACTTGATCAATCCAAGCTCTAATCCTCGTCTCCGTCTTAGATGATATTACGTTGAACTGGATTTTCCTGCTGACCCTCCTACAGAATTTCACTCTATTGAGACTTCACAAAATTCGGCAGCGTTAAAGGTTGCTTCCATAGTTGAAATAACGAGGATATCCATCGGAGATGACCTATTGGTGGAAGTCACGTCTGGGAAATCTGTCATACAAGTTAAGCCGCAATTTGATGCTATAGTAAAATTTCCTGGAAGAGGGATGATTGTCACTGGCGTTGCTCCTTTGGACTCAGGATTTGACTTCTACAGCAGATTCTTCGGCCCAAAAAACGGAGATCCTGTTACCGGGAGTGCATATTGTGGTTTAGCATCTTATTGGAGCAAGAAACTTGGCAAGTTTGATTTGAATACTTATCAGGCATCAGCAAGAGGCGGAGTTCTGAATACTCATGTTGATGAGCAGAAACAAAGGGTGTTGTTGCGAGGGAAAGCTGTTACAGTGATGGAAGGATGTATTCTATTTAGAACTTTTGTAATGCTAGAGATATGCATGATGGAGCTTCTTCTCAGAATGGTTCAGATAGATGAGGACCAATAG 756 0.4458 MDGFAELPFKGNPAAVCLLEEERDDKWMQAVAAGFNVSETGYLTRISESEGPANLINPSSNPRLRLRXYYVELDFPADPPTEFHSIETSQNSAALKVASIVEITRISIGDDLLVEVTSGKSVIQVKPQFDAIVKFPGRGMIVTGVAPLDSGFDFYSRFFGPKNGDPVTGSAYCGLASYWSKKLGKFDLNTYQASARGGVLNTHVDEQKQRVLLRGKAVTVMEGCILFRTFVMLEICMMELLLRMVQIDEDQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0400 251 PIRSF Ismrse_PhzF 1 55 IPR003719 GO:0003824|GO:0009058
Lele15g0400 251 PIRSF Ismrse_PhzF 63 227 IPR003719 GO:0003824|GO:0009058
Lele15g0400 251 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 84 215 - -
Lele15g0400 251 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 1 77 - -
Lele15g0400 251 Pfam Phenazine biosynthesis-like protein 70 223 IPR003719 GO:0003824|GO:0009058
Lele15g0400 251 Pfam Phenazine biosynthesis-like protein 2 66 IPR003719 GO:0003824|GO:0009058
Lele15g0400 251 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 2 69 IPR003719 GO:0003824|GO:0009058
Lele15g0400 251 SUPERFAMILY Diaminopimelate epimerase-like 2 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0400 Lele-ChrLele15 2298563 2300211 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0400 15 2298563 2300211 Lele05g1492 05 9555996 9562512 CCT
Lele15g0400 15 2298563 2300211 Lele07g1553 07 9574213 9576139 CCT
Lele15g0400 15 2298563 2300211 Lele08g1343 08 8581144 8584131 CCT
Lele13g2005 13 27382528 27390686 Lele15g0400 15 2298563 2300211 hybridization
Lele14g1940 14 25715965 25718080 Lele15g0400 15 2298563 2300211 hybridization