Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1536 ATGACCGTGGTAGCCGGAAACGGGGAGATCAAGAAGCGTCTAAGTGGATTTGAGAATGACATCAGGCATTTGAAGAAAGCTGAGATCACGCAGCCACAGGTCAGGGCAGACATGCAGCATGAGGTCGCCGCAGACCAAGTGAGGTCGCGGCAAACCAGATTCGTTGGTTCATCGATGGAAGAAAAGCTCCCATTTAAGAATCTCCATAACAGAGAGTACTCGGGCCACAAGAAGAAGGTGCACTCAGTGGCCTGGAATTGCACTGGAACAAAACTTGCTTCTGGTTCTGTGGACCAAACTGCTCGAATATGGTTTATTGAACCACACGGACATGGTAAGGTCAAAGATATTGAATTGAAGGGACACACTGATAGTGTGGATCAGCTATGTTGGGACCCCAAACATGCTGATCTGATTGCAACTGCATCAGGAGACAAGACTGTTCGTTTGTGGGATGCTCGTACTGGAAAGTGCTCACAACAGGCAGAACTTAGTGGGGAGAATATTAACATCACCTACAAACCTGATGGGACTCATGTAGCTGTAGGTAATAGGGATGACGAGTTGACAATACTGGATGTACGGAAGTTTAAACCAATTCATAAGCGCAAGTTCAGTTATGAGGTGAATGAGATTGCCTGGAACATGACGGGAGAGATGTTCTTCCTAACAACAGGAAATGGGACTGTCGAAGTACTGTCTTACCCATCTCTGCGGCCTCTTGATACCCTCATGGCCCATACTGCTGGTTGTTATTGCATTGCTATTGATCCAGTAGGAAGATATTTTGCCGTCGGAAGTGCTGATTCCCTAGTTAGCCTGTGGGATATCTCCGAGATGCTCTGTGTGCGTACCTTTACGAAGCTTGAATGGCCTGTGAGGACAATTAGTTTCAATCACACTGGTGATTACATTGCTTCTGCCAGTGAAGACTTGTTCATTGATATATCGAATGTGCATACGGGACGAACAGTGCATCAGATTCCATGTAGAGCTGCCATGAACAGCGTGGAATGGAATCCGAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAG 1116 0.4579 MTVVAGNGEIKKRLSGFENDIRHLKKAEITQPQVRADMQHEVAADQVRSRQTRFVGSSMEEKLPFKNLHNREYSGHKKKVHSVAWNCTGTKLASGSVDQTARIWFIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARTGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFESA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1536 371 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 157 - -
Lele04g1536 371 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 161 IPR001680 GO:0005515
Lele04g1536 371 SUPERFAMILY WD40 repeat-like 69 353 IPR036322 GO:0005515
Lele04g1536 371 Pfam WD domain, G-beta repeat 240 276 IPR001680 GO:0005515
Lele04g1536 371 Pfam WD domain, G-beta repeat 71 104 IPR001680 GO:0005515
Lele04g1536 371 Pfam WD domain, G-beta repeat 118 152 IPR001680 GO:0005515
Lele04g1536 371 FunFam THO complex subunit 3 233 367 - -
Lele04g1536 371 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 278 - -
Lele04g1536 371 Gene3D - 58 110 IPR015943 GO:0005515
Lele04g1536 371 Gene3D - 284 361 IPR015943 GO:0005515
Lele04g1536 371 FunFam THO complex subunit 3 59 223 - -
Lele04g1536 371 SMART WD40_4 155 193 IPR001680 GO:0005515
Lele04g1536 371 SMART WD40_4 66 105 IPR001680 GO:0005515
Lele04g1536 371 SMART WD40_4 279 318 IPR001680 GO:0005515
Lele04g1536 371 SMART WD40_4 112 152 IPR001680 GO:0005515
Lele04g1536 371 SMART WD40_4 321 359 IPR001680 GO:0005515
Lele04g1536 371 SMART WD40_4 196 234 IPR001680 GO:0005515
Lele04g1536 371 SMART WD40_4 237 276 IPR001680 GO:0005515
Lele04g1536 371 PRINTS G protein beta WD-40 repeat signature 139 153 IPR020472 -
Lele04g1536 371 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Lele04g1536 371 PRINTS G protein beta WD-40 repeat signature 92 106 IPR020472 -
Lele04g1536 371 PANTHER THO COMPLEX SUBUNIT 3 THO3 59 368 IPR040132 GO:0006406
Lele04g1536 371 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 104 IPR001680 GO:0005515
Lele04g1536 371 CDD WD40 71 353 - -
Lele04g1536 371 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 104 - -
Lele04g1536 371 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Lele04g1536 371 Gene3D - 111 283 IPR015943 GO:0005515
Lele04g1536 371 ProSitePatterns Trp-Asp (WD) repeats signature. 139 153 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1536 Lele-ChrLele04 20350618 20357640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1536 206 367 Miscellaneous Gene Families AT5G08390 23.313 8.57e-13 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1536 04 20350618 20357640 Lele25g1731 25 24974952 24979750 CCT
Lele04g1536 04 20350618 20357640 Lele26g1738 26 20908513 20913049 CCT
Lele04g1536 04 20350618 20357640 Lele27g0360 27 3152101 3154373 CCT
Lele04g1536 04 20350618 20357640 Lele04g1536 04 20350618 20357640 ECH
Lele01g1278 01 7771655 7775889 Lele04g1536 04 20350618 20357640 hybridization
Lele02g1546 02 19495749 19503418 Lele04g1536 04 20350618 20357640 hybridization