Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1546 ATGGCGTCGATGAACCTTGTGAGCTTCCATAAATATCCACCCCTCTCACTATTTCAGAAGATCCGACCATTGAATTTGAAGGAATCGAAGCTTCTAAAGCGAAATCCTTCTTCTTCTTCGTCTCCTTGTTGCAGAGTTCAGGCGATGATGAAGGAAAGGGAAGATTCAGAATCACAAGAATATGAGATCGACAAAGATAAGGCCAGAGAAGCCCTCCAAAAGCTTGACCAGCAGCTTCAGTCTCTCTCCACTAAACAAGTCTCTTCCCCTAAACTCAGAGCTTCGGATGTGAAATTCGAAGAAGCAGAAAGTGTGAAGGGTAGTCTGAATATGAGAGAAAAGGAGTTCGAAATATCAGACTCGTTTCTGGGTTATACTGCAATTGCGCTAGTGTTATTCACTATCTTTTACAATTTTCTGTTCTATACTGTAATTGCACCTGCCATTGATGCTCATGAATCATGGGATCTCAGAGAAGCTGATGGAGCATGTGATGAATCAGGCTTACGAATACTCGCAGCCATGGCCAGTTCTTTGAACCTCCCAATCATACTTAGATCTCAGCGATCTAGGTTGATATTGAGGTTTGATGATAAGATGATTAGGTGTTTCGGATTCGTTGGTTCATCGATGGAAGAAAAGCTCCCATTTAAGAATCTCCATAGCAGAGAGTACTTGGGCCACAAGAAGAAGGTGCACTCAGTGGCTTGGAATTGCACTGGAACAAAACTTGCTTCTGGTTCTGTGGACCAAACTGCTCGAATATGGTACATTGAGCCACACGGACATGGTAAGGTCAAAGATATTGAATTGAAGGGACACACTGATAGCGTGGATCAGTTATGTTGGGACCCCAAACATGCTGATCTGATTGCAACTGCATCAGGAGACAAGACTGTTCGTTTGTGGGATGCTCGTAGTGGAAAGTGCTCACAACAGGCAGAACTTAGTGGGGAGAATATTAACATCACCTACAAACCTGATGGGACTCATGTAGCTGTAGGTAATAGGGATGACGAGTTGACAATACTGGATGTACGGAAGTTTAAACCAATTCATAGGCGCAAGTTCAGTTATGAGGTGAATGAGATTGCCTGGAACATGACGGGAGAGATGTTCTTCCTAACAACAGGAAATGGGACTGTCGAAGTACTGTCTTACCCATCTCTGCGGCCTCTGGATACCCTCATGGCCCATACTGCTGGTTGCTATTGCATTGCTATTGATCCAGTAGGAAGATATTTTGCCGTCGGAAGTGCTGATTCCTTAGTTAGCCTGTGGGATATCTCCGAGATGCTCTGTGTGCGTACCTTTACGAAGCTTGAATGGCCTGTGAGGACAATTAGTTTCAATCATACCGGTGATTACATTGCCTCTGCCAGTGAAGACTTGTTCATTGATATATCGAATGTGCATACGGGACGAACAGTGCATCAGATTCCATGTAGAGCTGCCATGAACAGCGTGGAATGGAACCCGAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAG 1572 0.4389 MASMNLVSFHKYPPLSLFQKIRPLNLKESKLLKRNPSSSSSPCCRVQAMMKEREDSESQEYEIDKDKAREALQKLDQQLQSLSTKQVSSPKLRASDVKFEEAESVKGSLNMREKEFEISDSFLGYTAIALVLFTIFYNFLFYTVIAPAIDAHESWDLREADGACDESGLRILAAMASSLNLPIILRSQRSRLILRFDDKMIRCFGFVGSSMEEKLPFKNLHSREYLGHKKKVHSVAWNCTGTKLASGSVDQTARIWYIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFESA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1546 523 FunFam THO complex subunit 3 211 375 - -
Lele02g1546 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 430 - -
Lele02g1546 523 CDD WD40 221 505 - -
Lele02g1546 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 437 IPR001680 GO:0005515
Lele02g1546 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 309 - -
Lele02g1546 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Lele02g1546 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 313 IPR001680 GO:0005515
Lele02g1546 523 ProSitePatterns Trp-Asp (WD) repeats signature. 291 305 IPR019775 -
Lele02g1546 523 SMART WD40_4 473 511 IPR001680 GO:0005515
Lele02g1546 523 SMART WD40_4 218 257 IPR001680 GO:0005515
Lele02g1546 523 SMART WD40_4 389 428 IPR001680 GO:0005515
Lele02g1546 523 SMART WD40_4 348 386 IPR001680 GO:0005515
Lele02g1546 523 SMART WD40_4 431 470 IPR001680 GO:0005515
Lele02g1546 523 SMART WD40_4 264 304 IPR001680 GO:0005515
Lele02g1546 523 Gene3D - 193 354 IPR015943 GO:0005515
Lele02g1546 523 Coils Coil 51 85 - -
Lele02g1546 523 FunFam THO complex subunit 3 385 519 - -
Lele02g1546 523 Pfam WD domain, G-beta repeat 392 428 IPR001680 GO:0005515
Lele02g1546 523 Pfam WD domain, G-beta repeat 223 256 IPR001680 GO:0005515
Lele02g1546 523 Pfam WD domain, G-beta repeat 270 304 IPR001680 GO:0005515
Lele02g1546 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Lele02g1546 523 PANTHER THO COMPLEX SUBUNIT 3 THO3 213 520 IPR040132 GO:0006406
Lele02g1546 523 Gene3D - 355 518 IPR015943 GO:0005515
Lele02g1546 523 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Lele02g1546 523 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Lele02g1546 523 PRINTS G protein beta WD-40 repeat signature 291 305 IPR020472 -
Lele02g1546 523 SUPERFAMILY WD40 repeat-like 220 505 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1546 Lele-ChrLele02 19495749 19503418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1546 358 519 Miscellaneous Gene Families AT5G08390 23.313 5.24e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1546 02 19495749 19503418 Lele25g1731 25 24974952 24979750 CCT
Lele02g1546 02 19495749 19503418 Lele26g1738 26 20908513 20913049 CCT
Lele02g1546 02 19495749 19503418 Lele27g0360 27 3152101 3154373 CCT
Lele02g1546 02 19495749 19503418 Lele02g1546 02 19495749 19503418 ECH
Lele02g1546 02 19495749 19503418 Lele03g1291 03 7747566 7751808 hybridization
Lele02g1546 02 19495749 19503418 Lele04g1536 04 20350618 20357640 hybridization