Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1278 ATGGAAGAAAAGCTCCCATTTAAGAATCTCCATAGCAGAGAGTACTCGGGCCACAAGAAGAAGGTGCACTCAGTGGCCTGGAATTGCACTGGCACAAAACTTGCTTCTGGTTCTGTGGACCAAACTGCTCGAATATGGTATATTGAGCCACACGGACATGGTAAGATCAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGTTATGTTGGGACCCCAAACATGCTGATCTGATTGCAACCGCATCAGGAGACAAGACTGTTCGTTTGTGGGATGCTCGTAGTGGAAAGTGCTCGCAACAGGCAGAACTTAGTGGGGAGAACATTAACATCACCTACAAACCTGATGGGACTCATGTAGCTGTAGGTAATAGGGATGACGAGTTGACGATACTGGATGTACGGAAGTTTAAACCAATTCATAGGCGCAAGTTCAGTTATGAGGTGAATGAGATTGCCTGGAACATGACAGGAGAGATGTTCTTCCTAACAACAGGAAATGGGACTGTGGAAGTACTGTCTTACCCATCTCTGCGGCCTCTGGATACCCTCATGGCCCATACTGCTGGTTGTTATTGCATTGCTATTGATCCAGTAGGAAGATATTTTGCCGTCGGAAGTGCTGATTCCCTAGTTAGCCTGTGGGATATCTCCGAGATGCTCTGTGTGCGTACCTTTACGAAGCTTGAATGGCCTGTGAGGACAATTAGTTTCAATCATACCGGAGATTATATCGCATCTGCCAGTGAAGACTTGTTCATTGATATATCGAATTTGCATACGGGACGAACAGTGCATCAGATTCCATGTAGGGCTGCTATGAACAGCGTGGAATGGAATCCGAAATACAATTTACTTGCGTGTGCGGGTGATGACAAAAACAAGTATCAGGCCGATGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAG 942 0.4533 MEEKLPFKNLHSREYSGHKKKVHSVAWNCTGTKLASGSVDQTARIWYIEPHGHGKIKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDYIASASEDLFIDISNLHTGRTVHQIPCRAAMNSVEWNPKYNLLACAGDDKNKYQADEGVFRIFGFESA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1278 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Lele01g1278 313 Gene3D - 56 149 IPR015943 GO:0005515
Lele01g1278 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Lele01g1278 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Lele01g1278 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Lele01g1278 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Lele01g1278 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Lele01g1278 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Lele01g1278 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Lele01g1278 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Lele01g1278 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Lele01g1278 313 Gene3D - 1 55 IPR015943 GO:0005515
Lele01g1278 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Lele01g1278 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Lele01g1278 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Lele01g1278 313 FunFam THO complex subunit 3 175 309 - -
Lele01g1278 313 CDD WD40 11 295 - -
Lele01g1278 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Lele01g1278 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Lele01g1278 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 46 - -
Lele01g1278 313 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Lele01g1278 313 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Lele01g1278 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Lele01g1278 313 FunFam THO complex subunit 3 1 165 - -
Lele01g1278 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 46 IPR001680 GO:0005515
Lele01g1278 313 Gene3D - 150 308 IPR015943 GO:0005515
Lele01g1278 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 4 310 IPR040132 GO:0006406
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1278 Lele-ChrLele01 7771655 7775889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1278 148 309 Miscellaneous Gene Families AT5G08390 23.926 1.43e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1278 01 7771655 7775889 Lele25g1731 25 24974952 24979750 CCT
Lele01g1278 01 7771655 7775889 Lele26g1738 26 20908513 20913049 CCT
Lele01g1278 01 7771655 7775889 Lele27g0360 27 3152101 3154373 CCT
Lele01g1278 01 7771655 7775889 Lele01g1278 01 7771655 7775889 ECH
Lele01g1278 01 7771655 7775889 Lele03g1291 03 7747566 7751808 hybridization
Lele01g1278 01 7771655 7775889 Lele04g1536 04 20350618 20357640 hybridization