Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0627 ATGGCTTTGCCGAATCAGCAAACCGTTGATTACCCGAACTTCAAGCTCGTAATCGTTGGTGATGGTGGAACTGGCAAGACGACATTCGTCAAGAGGCATCTAACAGGAGAATTTGAGAAGAAATATGAACCTACCATTGGGGTTGAAGTCCATCCCTTGGATTTTTTCACAAACTGTGGGAAGATTCGATTCTACTGCTGGGATACAGCTGGACAAGAGAAATTTGGTGGCCTTAGAGATGGATATTATATCCATGGGCAATGTGCAATTATCATGTTTGATGTTACTGCACGGCTGACATACAAAAATGTTCCAACTTGGCATCGTGATCTTTGCCGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTAAAGAATAGGCAGGTGAAGGCAAAGCAAGTTACTTTCCACCGGAAGAAGAATTTGCAGTACTACGAGATTTCAGCAAAGAGTAACTACAACTTTGAGAAGCCTTTCCTGTACCTTGCCAGGAAACTTGCTGGTGATCCTAACTTGCACTTTGTAGAATCTCCTGCCTTGGCTCCACCTGAAGTTCAGATTGATTTAGCTGCACAACAACAGCATGAGGCAGAGCTTGCTCAAGCTGCTATTCAACCCCTTCCTGACGACGATGATGATGCCTTTGAGTAG 666 0.4414 MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAAIQPLPDDDDDAFE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0627 221 ProSiteProfiles small GTPase Ras family profile. 5 210 IPR001806 GO:0003924|GO:0005525
Lele04g0627 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 195 IPR027417 -
Lele04g0627 221 SMART ran_sub_2 19 220 - -
Lele04g0627 221 Gene3D - 4 219 IPR027417 -
Lele04g0627 221 SMART ras_sub_4 11 174 - -
Lele04g0627 221 CDD Ran 14 179 - -
Lele04g0627 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 PANTHER RAN GTPASE 1 219 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
Lele04g0627 221 TIGRFAM small_GTP: small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Lele04g0627 221 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Lele04g0627 221 SMART rab_sub_5 14 174 - -
Lele04g0627 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lele04g0627 221 FunFam GTP-binding nuclear protein 5 219 - -
Lele04g0627 221 ProSiteProfiles small GTPase Rab1 family profile. 8 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0627 Lele-ChrLele04 3793053 3796331 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0627 04 3793053 3796331 Lele25g0593 25 3769066 3769539 CCT
Lele04g0627 04 3793053 3796331 Lele26g0607 26 3873807 3875187 CCT
Lele04g0627 04 3793053 3796331 Lele27g1489 27 20930884 20932236 CCT
Lele04g0627 04 3793053 3796331 Lele28g0594 28 3797109 3798499 CCT
Lele04g0627 04 3793053 3796331 Lele04g0627 04 3793053 3796331 ECH