Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0594 ATGATGATACCGTGTATGGTTTTCTCGGAGATGGAAGAAGGGAGTGAGGAATGGAGAGCTATGAGCAGGAAAGTGACGGAGGCGTGTGAGACTCATGGCTGCTTCGTGCTTCTGCATAACAGAACCAGTTTGATTAGTTTACAGGAAGAAATGTTGACCGCCATGAAAGCTCTCTTTGATCTTCCTGAAGAGACCAAGATGAAGCACACTAGCCCTAAGCCTTACCGGAGCTACCATGCCAACTGCCCCATCATTCCTCTCCTTCAAAGCTTCGGCGTCGACGACGCTCCTCAGCCTCTCACTGCTCAAGCTTTCACTCACCTCATGTGGCCTCACGGCAACCCCACTTTCTGCGAGGCGATGAAGTCGATGAGCGACGAGATGCTGGAGCTGAACTTCGTGCTGATGAAGATGATAGTGGAGGGTCTGGGCCTTCAGAAACACTACATCTCAGACGTGGAGAAGATGAAGAGCACAAGTAATTTCAGGATGATAAAGTACAGAGCACCTTCTTCTTCCTCTTCTTCTTCCTCAAGCGTCCAAGACCTAGAGACTGGTCTCGTTCCTCACACCGACAAATGCGCCATAACCACCCTCTGTCAGAACGATGTCCGGGGACTCCAGGTCCTCACCAAACAAGGCCATTGGATAGATGTGAACGTTCCCCGGAATGGCCTAGTCGTCGTCGTTGGCGATATCCTCAAGGCTTGGAGCAATGGGAGGCTTCATGCGGTGACACACAGAGTGATGATGGGTGGCAATAAGGAGAGGTATTCGTTCGCGCAATTTGCACTGCCAAAGGAAGACGATGAGATCGAGGTGCCCCCTGAGTTGGTTGATTCTGATCATCCTCTTCTTTATCGACCTTTCAATTATGGAAAATACTTGGATTATTATACTTCATCTCTCAATGAAAACGCCCTCCAAGTATTCGCAGGTGTCTGA 945 0.4963 MMIPCMVFSEMEEGSEEWRAMSRKVTEACETHGCFVLLHNRTSLISLQEEMLTAMKALFDLPEETKMKHTSPKPYRSYHANCPIIPLLQSFGVDDAPQPLTAQAFTHLMWPHGNPTFCEAMKSMSDEMLELNFVLMKMIVEGLGLQKHYISDVEKMKSTSNFRMIKYRAPSSSSSSSSSVQDLETGLVPHTDKCAITTLCQNDVRGLQVLTKQGHWIDVNVPRNGLVVVVGDILKAWSNGRLHAVTHRVMMGGNKERYSFAQFALPKEDDEIEVPPELVDSDHPLLYRPFNYGKYLDYYTSSLNENALQVFAGV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0594 314 Gene3D - 2 312 IPR027443 -
Lele28g0594 314 FunFam 2-oxoglutarate-dependent dioxygenase DAO 1 312 - -
Lele28g0594 314 PRINTS Isopenicillin N synthase signature 25 42 - -
Lele28g0594 314 PRINTS Isopenicillin N synthase signature 190 211 - -
Lele28g0594 314 PRINTS Isopenicillin N synthase signature 291 309 - -
Lele28g0594 314 PRINTS Isopenicillin N synthase signature 254 272 - -
Lele28g0594 314 Pfam 2OG-Fe(II) oxygenase superfamily 180 263 IPR044861 -
Lele28g0594 314 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 157 266 IPR005123 -
Lele28g0594 314 SUPERFAMILY Clavaminate synthase-like 12 302 - -
Lele28g0594 314 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 80 IPR026992 -
Lele28g0594 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0594 Lele-ChrLele28 3797109 3798499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0594 1 299 Glycosyltransferase AT5G59530 27.389 2.90e-18 82.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0627 04 3793053 3796331 Lele28g0594 28 3797109 3798499 CCT
Lele25g0593 25 3769066 3769539 Lele28g0594 28 3797109 3798499 hybridization
Lele26g0607 26 3873807 3875187 Lele28g0594 28 3797109 3798499 hybridization