Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan6g0938 | ATGGCTGTTCAAGCTCAATATCCACCCAATATTCTTCTCCTAAACAGAAATGGTCAAGAAGGAAATGATTACTCATTACAACAACCACAATCAAAAGTTGAACTCCTTCATCAATCCCAGAATCTACACAACAATGAAAATGCTAATTCTCGCCAAAGAGGAAGAGAAGATGTTGTAACCAACCCATCTCCTAATAATATTATGAACCCAATGTTCCCTATGCAACCACATCCTCAAAACTTCATTGAGCTCTCTCAACTCCATAATCAACACCAAAATGTGGTCTCTACAGGCTTAGGCTTATCTTTTGGTGACCAACAAAAACAAAGATTACAACTTCATCAACAACAGCATGGGTGTAACTCATCTTCTTTCTTATCAGAAGGATTTTCTTCACAGGTGAAACAAAAAGGAGATGAATTCGACATTTTCCTTCATGCCCAGGGAGAGGAATTAATGCGTACATTGGCCGAGAAGATGCAAAGGCATTACCAAGAGCTCCTGCGCAAGGCGGAGGAGGCGGTGGCGCGTCGGCTTAGAGAAAAGGAAGCAGAGGTGGAGAAGGCCATGCGCAGACACGCAGAGCTAGAGGCACGCGCCGCCCAGATGAGCGCGGAGGCGCAGGTGTGGCAGGCCAAGGCGATGGCACAAGAGGCGGCAGCGGCATCGTTACAAGCCCAACTGCAGCAGACATTGACGGCTGCCGGATCCGCCGGGTGTCGCGGTGGGGATGACGGCGGCGCAGGGTTGCCATTCGCCCAGGATGGGGGCCAGGCGGAGGATGCTGAGTCGACTTATATTGATATGGACAGGGTGGAAGTTGTGGAGTCAGTGGCGGCGCGTGCAAAATGTAAGGGGTGTAGGAAGCGCGTGGTGTCTGTTGTGGTATTGCCTTGTCGACACTTGTGCATTTGTGCAGAATGTGATTCACGTCTTAGAGCATGCCCAATTTGCCTTACTCCAAAGAATTCAACCGTTGAAGTATATCTGTCTTAA | 996 | 0.4869 | MAVQAQYPPNILLLNRNGQEGNDYSLQQPQSKVELLHQSQNLHNNENANSRQRGREDVVTNPSPNNIMNPMFPMQPHPQNFIELSQLHNQHQNVVSTGLGLSFGDQQKQRLQLHQQQHGCNSSSFLSEGFSSQVKQKGDEFDIFLHAQGEELMRTLAEKMQRHYQELLRKAEEAVARRLREKEAEVEKAMRRHAELEARAAQMSAEAQVWQAKAMAQEAAAASLQAQLQQTLTAAGSAGCRGGDDGGAGLPFAQDGGQAEDAESTYIDMDRVEVVESVAARAKCKGCRKRVVSVVVLPCRHLCICAECDSRLRACPICLTPKNSTVEVYLS* | 332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan6g0938 | 331 | PANTHER | BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE | 1 | 330 | - | - | |
| Lan6g0938 | 331 | PIRSF | SBP1_RNase_bind | 1 | 331 | IPR017066 | - | |
| Lan6g0938 | 331 | Coils | Coil | 157 | 213 | - | - | |
| Lan6g0938 | 331 | MobiDBLite | consensus disorder prediction | 44 | 68 | - | - | |
| Lan6g0938 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 331 | IPR013083 | - | |
| Lan6g0938 | 331 | ProSiteProfiles | Zinc finger RING-type profile. | 284 | 318 | IPR001841 | - | |
| Lan6g0938 | 331 | PANTHER | SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN | 1 | 330 | IPR017066 | - | |
| Lan6g0938 | 331 | Pfam | Zinc finger, C3HC4 type (RING finger) | 282 | 323 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan6g0938 | Lan-Chr6 | 8797668 | 8799290 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan6g0938 | 284 | 320 | Miscellaneous Gene Families | AT2G21380 | 43.243 | 2.17e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan6g0938 | K19042 | - | gmx:100779548 | 335.495 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan6g0938 | 6 | 8797668 | 8799290 | Lan17g0981 | 17 | 13834658 | 13836343 | LSH | |
| Lan17g0387 | 17 | 2892582 | 2894552 | Lan6g0938 | 6 | 8797668 | 8799290 | PCT | |
| Lan18g0931 | 18 | 14539324 | 14540498 | Lan6g0938 | 6 | 8797668 | 8799290 | PCT | |
| Lan6g0318 | 6 | 2478236 | 2479808 | Lan6g0938 | 6 | 8797668 | 8799290 | PCT | |
| Lan6g0938 | 6 | 8797668 | 8799290 | Lan17g0387 | 17 | 2892582 | 2894552 | PCT | |
| Lan6g0938 | 6 | 8797668 | 8799290 | Lan18g0931 | 18 | 14539324 | 14540498 | PCT | |
| Lan6g0938 | 6 | 8797668 | 8799290 | Lan6g0318 | 6 | 2478236 | 2479808 | PCT |