Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0387 ATGGCTGTTCAAGCTCAATATCCATTCAATGTGTTTCGTTTAAACAGGCAACAACAAGGATATGATTATTCATCGGAACAACATACAGGACTAGATCAATCCCATATGTTGTTCAACAATGGAGGTACTAGTTCTCGGAAGAGAGGAAGAGAAGAAACAGCTCCTAACGTTGTTAATCCATTATACACTTTGCAATCTCAATCTCAGCCTCCTCAGCTTATAGACCTCACTCAACTCCATAACAGTCAACATAATGCAGTTTCTACAGGCTTAGGTTTATCCTTCGGTGATCAACATCAACAACAGCATAGCTCTCTCTCATCTCCTTTCTTATCTCTATTCTCCGAAGGCTTAAACTCCCAAATCAAACAACAGAGAGATGAAATTGACCAATTCCTTCGAGCCCAGGGAGAACAACTGAGTCAAGCATTAGCGGAGAAGAGACATAAACATTATCGGGAACTCCTAAACGCAGCGGATGAATCAGTTGCACGACGGTTAAGAGAAAAAGAAGCTGAGGTGGAGAAAGCAAAGCGCAAGAACGCAGAGTTAGAGGAACACGCGGCGCAGCTTAGCATGGAAGCGCAGGTTTGGCAGGCCAAGATAAAAGCCCAGGAATCAACCGCTGCATCGTTACAGGCCCAACTGCAACACGCTGTTATGATGAGTCATGAAAAGAGGGCACTTTCTTGTTTCGTGGGCCAGGCTGAGGATGCTGAATCAGCATATAATGACCCTGACCGGGTCACGGTGTCGGGTCCCAAATGTAGGGGTTGCGATTCACGGGTTGCGTCGGTGGTGGTTTTACCGTGTCGGCATCTTTGCGTGTGCGTGGAATGTGATAGACATTTTAGGGCGTGCCCTGTTTGCTTCACCGTTAAAAATTCTTCCATTGAAGTTTGTCTATCTTAG 912 0.455 MAVQAQYPFNVFRLNRQQQGYDYSSEQHTGLDQSHMLFNNGGTSSRKRGREETAPNVVNPLYTLQSQSQPPQLIDLTQLHNSQHNAVSTGLGLSFGDQHQQQHSSLSSPFLSLFSEGLNSQIKQQRDEIDQFLRAQGEQLSQALAEKRHKHYRELLNAADESVARRLREKEAEVEKAKRKNAELEEHAAQLSMEAQVWQAKIKAQESTAASLQAQLQHAVMMSHEKRALSCFVGQAEDAESAYNDPDRVTVSGPKCRGCDSRVASVVVLPCRHLCVCVECDRHFRACPVCFTVKNSSIEVCLS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0387 303 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 104 - -
Lan17g0387 303 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 104 302 - -
Lan17g0387 303 PIRSF SBP1_RNase_bind 1 303 IPR017066 -
Lan17g0387 303 ProSiteProfiles Zinc finger RING-type profile. 256 290 IPR001841 -
Lan17g0387 303 MobiDBLite consensus disorder prediction 33 54 - -
Lan17g0387 303 Coils Coil 160 215 - -
Lan17g0387 303 Coils Coil 115 135 - -
Lan17g0387 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 302 IPR013083 -
Lan17g0387 303 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 104 IPR017066 -
Lan17g0387 303 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 104 302 IPR017066 -
Lan17g0387 303 Pfam Zinc finger, C3HC4 type (RING finger) 255 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0387 Lan-Chr17 2892582 2894552 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0387 K19042 - gmx:100779548 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0387 17 2892582 2894552 Lan18g0931 18 14539324 14540498 LSH
Lan17g0387 17 2892582 2894552 Lan6g0318 6 2478236 2479808 LSH
Lan17g0387 17 2892582 2894552 Lan6g0938 6 8797668 8799290 PCT
Lan17g0387 17 2892582 2894552 Lan17g0981 17 13834658 13836343 PCT
Lan6g0938 6 8797668 8799290 Lan17g0387 17 2892582 2894552 PCT
Lan17g0981 17 13834658 13836343 Lan17g0387 17 2892582 2894552 PCT