Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0981 ATGGCTGTTCAAGCTCAATATCCATCCAACCTCCTTTTTCTAAACAGAAATGGTGAAGAAGGAAATGATTACTCATCATTACAACAACCACAATCAAAAGGAGGAATCCTAAATCAATCTCATAGTCTACACAACAAGGGAAATATGAATGGTGGTGATAATTCTAATTCTGTCAAGAGAGGAAGAGAAGCTATTATAGCTAACACAACCCCTAATAATATTATGAATCCATTGTTCTCTATGCAATCACATCCTCCACAACTTATTGATCTTTCTCAACTACATAATCAACACCAAAATGTGGTATCTACAGGCCTTGGCTTATCCTTTGATCAACAACAACAACAAAGATTACAACTTCAACAACAACAACAACTACATGGGTGTCACTCTTCCTCGTACTTATCTTTATTGCCAGAAGGGTTTTCTACACATATGAAACGACAAAGAGATGAAATTGATCAATTCCTTCATGCCCAGGGAGATGAATTACAGCGTACATTGGCGGAGAAGCGCCAGAAGCATTGCCGGGCTCTGTCCCGTGCGGCAGCGGAGGTGGTGGCGCGTCTTTTGAGAGAGAAAGAAGCGGAGATGGAGAAAGCCACGCGCCAAAACGCGGAGTTAGAGGCCCATGCTGCCCAGTTGAGCGCGGAGGCGCAGGTGTGGCAGGCCAAGGCGAGGGCGCAGGAGGCGGCGGCGGCATCGTTACAAGCGCAGTTGCAGCAGACCATGATGGCATTCGGAGCCGGCGGGTGTCACGGTGGCGATGATGGCGGCCCAGGGCTGTCATGCGCCATTGATGAGGGCCAGGCGGAAGATGCTGAGTCGGGTTATATTGATCCAGACAGAGTGGAAGTCATTGCACCAGTGGCGGCGGCGCGTGCAAAATGTCGTGGATGTGGGAAGCGCGTGGCATCGGTGGTGGTGTTGCCGTGTCGGCACTTGTGCATGTGTGCAGAATGTGATACGCATTTTAAAGCGTGTCCAGTTTGCCTTATTCTAAAAAATTCAACCATTGAAGTGTTTATCTCTTAA 1035 0.4783 MAVQAQYPSNLLFLNRNGEEGNDYSSLQQPQSKGGILNQSHSLHNKGNMNGGDNSNSVKRGREAIIANTTPNNIMNPLFSMQSHPPQLIDLSQLHNQHQNVVSTGLGLSFDQQQQQRLQLQQQQQLHGCHSSSYLSLLPEGFSTHMKRQRDEIDQFLHAQGDELQRTLAEKRQKHCRALSRAAAEVVARLLREKEAEMEKATRQNAELEAHAAQLSAEAQVWQAKARAQEAAAASLQAQLQQTMMAFGAGGCHGGDDGGPGLSCAIDEGQAEDAESGYIDPDRVEVIAPVAAARAKCRGCGKRVASVVVLPCRHLCMCAECDTHFKACPVCLILKNSTIEVFIS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0981 344 PIRSF SBP1_RNase_bind 1 344 IPR017066 -
Lan17g0981 344 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 343 - -
Lan17g0981 344 Coils Coil 184 225 - -
Lan17g0981 344 MobiDBLite consensus disorder prediction 14 58 - -
Lan17g0981 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 344 IPR013083 -
Lan17g0981 344 ProSiteProfiles Zinc finger RING-type profile. 297 331 IPR001841 -
Lan17g0981 344 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 343 IPR017066 -
Lan17g0981 344 Pfam Zinc finger, C3HC4 type (RING finger) 295 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0981 Lan-Chr17 13834658 13836343 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0981 K19042 - gmx:100788122 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0938 6 8797668 8799290 Lan17g0981 17 13834658 13836343 LSH
Lan17g0387 17 2892582 2894552 Lan17g0981 17 13834658 13836343 PCT
Lan18g0931 18 14539324 14540498 Lan17g0981 17 13834658 13836343 PCT
Lan6g0318 6 2478236 2479808 Lan17g0981 17 13834658 13836343 PCT
Lan17g0981 17 13834658 13836343 Lan17g0387 17 2892582 2894552 PCT
Lan17g0981 17 13834658 13836343 Lan18g0931 18 14539324 14540498 PCT
Lan17g0981 17 13834658 13836343 Lan6g0318 6 2478236 2479808 PCT