Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0318 ATGCTCATGTCTGTTCAAGCTCAATACCCATCAAATGTATTTCTTTTAAGCAGTGGCAAAAGTGTGCAAGAAGGACATGACTATTCATTGCAACCACAATCAGGCCTTAATCAATCCCATATGTTGTTCAACAATGGAGCTAGTAGTTCTAGGAAGAGAGGAAGAGAAGAAGCCGCAACGACCGGAGTTAGCCAAACAGTTCCTAATCCATTATTCTCTGTACAACTTCAATCTCAGACTCCTCAGCTTATTGACCTCACCCAAATCCATAATCATAATCATAATCACCAACAAAATGCAGTCTCTACTGGCTTAGGCTTATCGTTCGGTGATCAACAAAAACAATTGCATAACCAACAACAATTATCTCTATTCTCCGAAGGCTTGAACTCTCAAATCAAACAGCAGAGAGATGAGGTTGAACAATTCCTTCAAGTCCAGGGAGAACAGTTGAGGCAGACATTAGCGGATATGAGGGAGAGACATTATCGTTCACTATTGAACGCAGTTGATGAATCAGTTGCACGACGGTTAAGAGAAAAGCAAACTGATATGGAGAAAGCCACGCGCAGAAACGCAGAGTTAGAAGCACGCGCGGCTCAGCTCATCGTAGAAGCGCAGGTTTGGCAGGCGAAGGTGAAGGCGCAGGAATCAACCGCTGCATCGTTGCAGGCACAACTGCACCACGCTATTATGATGAGCCATGAAAAGAGAGTGGTTGAAGATGGTGGGGTGCTATCGTGCGCCGTGGGCCATGCTGAGGATGCTGAGTCAGCTCATGTTGACCCGGGTCGGGTCACGGTGTCGGGTCCCAGTTGTAGCGGTTGCGATTTACGGGTGGCGTCGGTGGTGGTTTTACCGTGTCGACACCTTTGTGTGTGTACCGAATGCGACATGCATTTTCGGGCGTGCCCCGTTTGTCTCACCGTTAAAAATTCATCCATTCAAGTTTGTCTATCTTAA 963 0.4663 MLMSVQAQYPSNVFLLSSGKSVQEGHDYSLQPQSGLNQSHMLFNNGASSSRKRGREEAATTGVSQTVPNPLFSVQLQSQTPQLIDLTQIHNHNHNHQQNAVSTGLGLSFGDQQKQLHNQQQLSLFSEGLNSQIKQQRDEVEQFLQVQGEQLRQTLADMRERHYRSLLNAVDESVARRLREKQTDMEKATRRNAELEARAAQLIVEAQVWQAKVKAQESTAASLQAQLHHAIMMSHEKRVVEDGGVLSCAVGHAEDAESAHVDPGRVTVSGPSCSGCDLRVASVVVLPCRHLCVCTECDMHFRACPVCLTVKNSSIQVCLS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0318 320 Pfam Zinc finger, C3HC4 type (RING finger) 272 309 - -
Lan6g0318 320 MobiDBLite consensus disorder prediction 25 65 - -
Lan6g0318 320 MobiDBLite consensus disorder prediction 25 49 - -
Lan6g0318 320 Coils Coil 178 212 - -
Lan6g0318 320 ProSiteProfiles Zinc finger RING-type profile. 273 307 IPR001841 -
Lan6g0318 320 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 3 122 - -
Lan6g0318 320 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 123 319 - -
Lan6g0318 320 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 123 319 IPR017066 -
Lan6g0318 320 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 3 122 IPR017066 -
Lan6g0318 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 320 IPR013083 -
Lan6g0318 320 PIRSF SBP1_RNase_bind 2 320 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0318 Lan-Chr6 2478236 2479808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0318 K19042 - gmx:100779548 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0387 17 2892582 2894552 Lan6g0318 6 2478236 2479808 LSH
Lan18g0931 18 14539324 14540498 Lan6g0318 6 2478236 2479808 LSH
Lan6g0318 6 2478236 2479808 Lan6g0938 6 8797668 8799290 PCT
Lan6g0318 6 2478236 2479808 Lan17g0981 17 13834658 13836343 PCT
Lan6g0938 6 8797668 8799290 Lan6g0318 6 2478236 2479808 PCT
Lan17g0981 17 13834658 13836343 Lan6g0318 6 2478236 2479808 PCT