Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0373 ATGTACAGAGAGCTTGGTGTTATTGGTTCCATTTCCAAATCGGAAGATCGAAAACGAATCAACGAGGTCCTTGATAAGCAGCTTCAACGATCATCACCTTCTACTTCAAGACCCATTAACCCTAAAGATAATAGAGATAGAGATAATAAGTCTTCCCTTAATTCTTCTAATATCTCCAAAAATTCCAATGTTTCAGAGGAATCTGAAACAGACAGTGAAGAGGTAGATGTTAGTGGTTCTGATGGAGATGACACCTCTTGGATCTCATGGTTCTGCAATCTGAGAGGAAATGAGTTCTTTTGCGAGGTTGATGATGATTACATCCAAGACGACTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTACGATTATGCTCTTGATTTAATTTTGGATGTTGAGTCTTCCCATGGTGACATGTTCACAGAGGAACAAAATGAGTTAATTGAATCAGCAGCGGAGATGCTTTACGGTCTGATTCATGCTCGATATGTATTGACAAGCAAAGGAATGGCTGCCATGCTCGACAAGTACAAGAACTACGATTTTGGCAGATGCCCAAGAGTTTATTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCTAGGTCAAGTACCGTAAAAATATATTGTCCTAGATGTGAAGACCTTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTCTTCTTGATGACATATGGACAATTGAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTTTTTGGGTACAAAATTCACAAGCCATGA 822 0.4075 MYRELGVIGSISKSEDRKRINEVLDKQLQRSSPSTSRPINPKDNRDRDNKSSLNSSNISKNSNVSEESETDSEEVDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGYKIHKP* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0373 273 Pfam Casein kinase II regulatory subunit 86 269 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 ProSitePatterns Casein kinase II regulatory subunit signature. 187 218 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 SUPERFAMILY Casein kinase II beta subunit 84 272 IPR035991 GO:0005956|GO:0019887
Lan18g0373 273 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 272 - -
Lan18g0373 273 PRINTS Casein kinase II regulatory subunit family signature 86 102 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 PRINTS Casein kinase II regulatory subunit family signature 103 117 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 PRINTS Casein kinase II regulatory subunit family signature 158 179 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 PRINTS Casein kinase II regulatory subunit family signature 183 204 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 PRINTS Casein kinase II regulatory subunit family signature 205 226 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 PRINTS Casein kinase II regulatory subunit family signature 233 250 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 MobiDBLite consensus disorder prediction 51 65 - -
Lan18g0373 273 Gene3D - 184 258 - -
Lan18g0373 273 MobiDBLite consensus disorder prediction 19 82 - -
Lan18g0373 273 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 79 183 IPR016149 GO:0005956|GO:0019887
Lan18g0373 273 PANTHER CASEIN KINASE II SUBUNIT BETA 1 272 IPR000704 GO:0005956|GO:0019887
Lan18g0373 273 SMART CK_II_beta_2 86 269 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0373 Lan-Chr18 7005208 7009377 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0373 K03115 - gmx:100780095 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0394 17 2934176 2936809 Lan18g0373 18 7005208 7009377 LSH
Lan18g0373 18 7005208 7009377 Lan6g0320 6 2487271 2490051 LSH
Lan18g0373 18 7005208 7009377 Lan6g0946 6 8863576 8867676 PCT
Lan18g0373 18 7005208 7009377 Lan17g0974 17 13754699 13763395 PCT
Lan18g0373 18 7005208 7009377 Lan17g0394 17 2934176 2936809 PCT
Lan18g0373 18 7005208 7009377 Lan18g0373 18 7005208 7009377 PCT
Lan18g0373 18 7005208 7009377 Lan6g0320 6 2487271 2490051 PCT