Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0974 ATGTCAGGCATGTACAGAGAGCGTGTCGGTGGTTCAATTTCCAAATCTGAGGATCGAAAACGAATCAATGAGGTCCTCGATAAGCAGCTCGAGCGATCTTCACCCTCAACTTCAAGACCCATTAAAGATAACAGAGATAATAAGTCTTCTCTTAATTCTGCTAACATCTCCAAAAATTCTAATGTTTCAGCTGCAGAGGAATCTGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGTGATGACACATCTTGGATCTCTTGGTTTTGCAATCTGAGAGGAAATGAGTTCTTTTGCGAAGTTGATGATGATTACATCCAAGACGACTTCAACCTTTGTGGATTAAGCAGTCAAGTGCCTTATTATGATTATGCTCTTGATTTAATTTTGGATGTTGAGTCTTCCCATGGTGACATGTTCACAGAGGAGCAAAATGAGTTAATTGAATCAGCAGCGGAGATGCTTTATGGTCTGATTCATGCTCGATATGTATTGACAAGCAAAGGAATGGCTGCCATGCTCGACAAGTACAAGAACTACGATTTTGGCAGATGCCCAAGAGTTTATTGCTCTGGGCAACCCTGTCTTCCAGTTGGTCAGTCAGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACCTTTACTATCCTCGGTCCAAGTATCAAGGCAATATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTATTCTTGATGACATATGGACAACTGAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 822 0.4148 MSGMYRERVGGSISKSEDRKRINEVLDKQLERSSPSTSRPIKDNRDNKSSLNSANISKNSNVSAAEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0974 273 ProSitePatterns Casein kinase II regulatory subunit signature. 187 218 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 79 183 IPR016149 GO:0005956|GO:0019887
Lan17g0974 273 MobiDBLite consensus disorder prediction 47 66 - -
Lan17g0974 273 PRINTS Casein kinase II regulatory subunit family signature 86 102 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 PRINTS Casein kinase II regulatory subunit family signature 103 117 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 PRINTS Casein kinase II regulatory subunit family signature 158 179 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 PRINTS Casein kinase II regulatory subunit family signature 183 204 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 PRINTS Casein kinase II regulatory subunit family signature 205 226 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 PRINTS Casein kinase II regulatory subunit family signature 233 250 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 Pfam Casein kinase II regulatory subunit 86 269 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 PANTHER CASEIN KINASE II SUBUNIT BETA 4 272 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 SUPERFAMILY Casein kinase II beta subunit 84 272 IPR035991 GO:0005956|GO:0019887
Lan17g0974 273 SMART CK_II_beta_2 86 269 IPR000704 GO:0005956|GO:0019887
Lan17g0974 273 MobiDBLite consensus disorder prediction 11 28 - -
Lan17g0974 273 MobiDBLite consensus disorder prediction 1 82 - -
Lan17g0974 273 PANTHER CASEIN KINASE II SUBUNIT BETA-2 4 272 - -
Lan17g0974 273 Gene3D - 184 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0974 Lan-Chr17 13754699 13763395 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0974 K03115 - gmx:100799304 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0946 6 8863576 8867676 Lan17g0974 17 13754699 13763395 LSH
Lan17g0394 17 2934176 2936809 Lan17g0974 17 13754699 13763395 PCT
Lan18g0373 18 7005208 7009377 Lan17g0974 17 13754699 13763395 PCT
Lan6g0320 6 2487271 2490051 Lan17g0974 17 13754699 13763395 PCT