Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0394 ATGAACAGAGAAGGAGGAAGAGATGTTGGTGTTGATCGAAGGAAGCGAATCAACGAGGATCTTGATAAGCACCTTCACAAATCCTCCACTTCCGTTTCTACCTCGAAGCCAATCAAATTCATATTTCCCAATAACACTCATTTTTCTCCCACTAACAACTCCAACGCTTCTCTTTCTCATGAGGAATCTGAAACAGACAGTGAAGAATCAGAGGTTAGTGGTTCTGATGGTGATGACACACCTTGGATCTCATGGTTTTGCAATCTCAGAGGAAATGAATTCTTTTGTGAGGTTGATGATGATTACATACAAGACAATTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTCACTATGATTTTGCGCTTGATTTGATTTTGGATGTTGACTCTACCCATGATGAAATGCTCACAAAGGAAGAAAATGAGGAAATTGAATCAGCTGCTGGGATGCTCTATGGTTTGATTCATGTCCGGTACATCCTGACAAGCAAAGGAATGGCAGCCATGCTGGAGAAATACAAAAACTATGACTTCGGTAGATGCCCAAGAGCTTACTGCTCAGGGCAACCATGTCTTCCAGTTGGTCTGTCAGACATCCCTGGGTCAAGTACTGTGAAACTATATTGCCCAAGGTGTGAAGACGTTTACAACCCTCAGTCGAAGTATCATAATGTTGATGGAGCTTATTTTGGAACCACTTTTCCTAACCTCTTCTTAATGACATATGGGCATCTGAAGCCGCAAAAGCCGACACAAAGATACATTCCTCGAGTTTTTGGTTTTAAAGTTCACAAGCCATGA 804 0.4192 MNREGGRDVGVDRRKRINEDLDKHLHKSSTSVSTSKPIKFIFPNNTHFSPTNNSNASLSHEESETDSEESEVSGSDGDDTPWISWFCNLRGNEFFCEVDDDYIQDNFNLCGLSSQVPHYDFALDLILDVDSTHDEMLTKEENEEIESAAGMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRAYCSGQPCLPVGLSDIPGSSTVKLYCPRCEDVYNPQSKYHNVDGAYFGTTFPNLFLMTYGHLKPQKPTQRYIPRVFGFKVHKP* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0394 267 SUPERFAMILY Casein kinase II beta subunit 80 266 IPR035991 GO:0005956|GO:0019887
Lan17g0394 267 Pfam Casein kinase II regulatory subunit 82 263 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 PANTHER CASEIN KINASE II SUBUNIT BETA 13 266 - -
Lan17g0394 267 SMART CK_II_beta_2 81 263 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 74 178 IPR016149 GO:0005956|GO:0019887
Lan17g0394 267 PANTHER CASEIN KINASE II SUBUNIT BETA 13 266 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 MobiDBLite consensus disorder prediction 30 60 - -
Lan17g0394 267 Gene3D - 179 252 - -
Lan17g0394 267 PRINTS Casein kinase II regulatory subunit family signature 81 97 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 PRINTS Casein kinase II regulatory subunit family signature 98 112 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 PRINTS Casein kinase II regulatory subunit family signature 153 174 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 PRINTS Casein kinase II regulatory subunit family signature 178 199 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 PRINTS Casein kinase II regulatory subunit family signature 200 221 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 PRINTS Casein kinase II regulatory subunit family signature 227 244 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 ProSitePatterns Casein kinase II regulatory subunit signature. 182 213 IPR000704 GO:0005956|GO:0019887
Lan17g0394 267 MobiDBLite consensus disorder prediction 1 29 - -
Lan17g0394 267 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0394 Lan-Chr17 2934176 2936809 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0394 K03115 - sind:105167602 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0394 17 2934176 2936809 Lan18g0373 18 7005208 7009377 LSH
Lan17g0394 17 2934176 2936809 Lan6g0320 6 2487271 2490051 LSH
Lan17g0394 17 2934176 2936809 Lan6g0946 6 8863576 8867676 PCT
Lan17g0394 17 2934176 2936809 Lan17g0974 17 13754699 13763395 PCT
Lan18g0373 18 7005208 7009377 Lan17g0394 17 2934176 2936809 PCT