Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0276 ATGAACGGTGCCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCAAACCCTCTGGATTGGAAATTCTCGCAGGTTTTCGGAGAACGTACGGCAGGGGAAGAGGTTCAAGAAGTGGACATAATTTCTGCTATTGAATTTTACAAGTCTGGTGATTATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTCTTTGAAAGGACAGATACAAAAGATCATGGTGAATCAAGAAGAGATTTGGAGAGGGTGGACTATTCTATTACTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGTTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTCGACCCTTCGAAAGGAATGAGAAATGGCCCTATTGCTAGTTCAAGTAGTTCCACAGTTCATCTTGCAAATGGGGGATCTCCTGAAAGATCACACAGCTATCTAAGCAATGACTTCTCATTTCCACCAGGAGGCATACCATCGCTAAGATTACCCACGGTAAGTAGTCATGAAACCAGCTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCCATTTCAAATAACAGTGATGGTGAAACTTTCGTATCAGCCGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAACATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACGTTGGCATATAGCAGTTCGAAGGGTTCAATTCGTCTTGTTGACTTACGGCAATCAGCATTGTGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTTACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATTAATATGGATTCAGGGCCCGTCGCAACTTTCCAGGTTCATGAGTATTTACGACCTAAGCTTTGTGATTTATATGAAAATGACTCCATCTTTGATAAGTTCGAGTGTTGTCTGAGTGGTGATGGGTTGCATGTAGCCACTGGTTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGAAGTGCCGAGGCCTCAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCGAGGCCTTCTAGATCACTGGGAAATAGTATAACAAGAGTTGTCAGACGAGGAGCAGAAACCCCTGGTATTGATGCAAATGGCAATTCATTTGATTTCACAACAAAGTTGCTGCATTTAGCATGGCACCCAACTGAAAATGCAATTGCTTGTGCTGCTGCTAATAGCTTGTACATGTACTATGCCTAA 1539 0.4204 MNGADEVVAAPAGPPNPLDWKFSQVFGERTAGEEVQEVDIISAIEFYKSGDYLATGDRGGRVVLFERTDTKDHGESRRDLERVDYSITRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKGMRNGPIASSSSSTVHLANGGSPERSHSYLSNDFSFPPGGIPSLRLPTVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFVSADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYSNLFRVFGCAPGSAEASTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAETPGIDANGNSFDFTTKLLHLAWHPTENAIACAAANSLYMYYA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0276 512 SMART WD40_4 270 310 IPR001680 GO:0005515
Lal8g0276 512 SMART WD40_4 105 145 IPR001680 GO:0005515
Lal8g0276 512 SMART WD40_4 220 259 IPR001680 GO:0005515
Lal8g0276 512 SMART WD40_4 31 66 IPR001680 GO:0005515
Lal8g0276 512 SMART WD40_4 371 425 IPR001680 GO:0005515
Lal8g0276 512 SMART WD40_4 329 367 IPR001680 GO:0005515
Lal8g0276 512 PIRSF PPA2_B55 11 512 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Lal8g0276 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 229 243 IPR018067 -
Lal8g0276 512 SUPERFAMILY WD40 repeat-like 39 504 IPR036322 GO:0005515
Lal8g0276 512 MobiDBLite consensus disorder prediction 435 458 - -
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 231 258 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 259 286 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 287 315 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 316 343 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 344 371 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 372 397 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 424 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 481 510 IPR000009 GO:0000159|GO:0019888
Lal8g0276 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lal8g0276 512 Gene3D - 76 510 IPR015943 GO:0005515
Lal8g0276 512 MobiDBLite consensus disorder prediction 158 189 - -
Lal8g0276 512 MobiDBLite consensus disorder prediction 167 189 - -
Lal8g0276 512 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0276 Lal-Chr8 1849861 1856832 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0276 K04354 - gmx:100799449 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0276 8 1849861 1856832 Lal8g0276 8 1849861 1856832 ECH
Lal25g0316 25 2161149 2168775 Lal8g0276 8 1849861 1856832 LSH
Lal10g1104 10 17890023 17897233 Lal8g0276 8 1849861 1856832 LSH
Lal8g0276 8 1849861 1856832 Lal20g1109 20 15265319 15277263 PCT
Lal8g0276 8 1849861 1856832 Lal1g1355 1 15340587 15349274 PCT
Lal20g1109 20 15265319 15277263 Lal8g0276 8 1849861 1856832 PCT
Lal1g1355 1 15340587 15349274 Lal8g0276 8 1849861 1856832 PCT