Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1104 ATGAACGGTGGCGATGAGGTAATCGCAGCTCCGGCGGGTCCATCAAACCCTCTGGATTGGAAATTCTCGCAGGTTTTCGGAGAACGTACGGCAGGGGAAGAGGTTCAAGAAGTGGACATAATTTCTGCTATTGAATTTTACAAGTCTGGTGATTATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTGTTTGAAAGGACAGATACAAAAGATCATGGTGGATCAAGAAGAGATTTGGAGAGGATGGAGTATTCTATTAGCAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGTTTGGAAATAGAAGAGAAAATCAACAAAATAAGATGGTGCCAAAAAGCTAATGATGCCCTCTTCCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAGAAGAAGGTCAAGAAAATTTCTGAGATGAATGTCGACCCTACGAAAGGAGTGGGAAATGGCTCTATTGCTAGTTCAAGTAGTTCCACAATTCATCTTGCAAATGGAGGATCTCCAGAAAGATCACACAACTATCTAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCATCGCTAAGATTACCCACGGTAAGTAGCCATGAAACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCTCATGCTCATGATTATCATATCAATTCCATTTCAAATAACAGCGATGGTGAAACATTCATATCAGCTGATGACTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTTAAACCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACATTGGCGTATAGCAGTTCGAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTTACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGGGTGATGGAAGATACATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATTAATATGGACTCAGGGCCCGTCGCAACTTTCCAGGTTCATGAGTATTTACGACCTAAGCTTTGTGACTTGTATGAAAATGACTCGATCTTTGATAAGTTCGAATGTTGCTTGAGTGGTGATGGATTGCGTGTAGCCACTGGTTCTTACAGCAATCTATTCCGCGTGTTTGGTTGTGCCCCGGGAAGCACTGAGGCCACAACTTTGGAAGCCAGTAAAAATCCGATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCATTGGGAAATAGCATAACAAGAGTTGTAAGACGAGGAGCAGAAACCCCTGGTGTTGATGCAAATGGCAATTCTTTTGACTTTACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAAAATGCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCCTAA 1539 0.4152 MNGGDEVIAAPAGPSNPLDWKFSQVFGERTAGEEVQEVDIISAIEFYKSGDYLATGDRGGRVVLFERTDTKDHGGSRRDLERMEYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQKANDALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPTKGVGNGSIASSSSSTIHLANGGSPERSHNYLSNDFSFPPGGIPSLRLPTVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGGDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPTENAIACAAANSLYMYYA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1104 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 229 243 IPR018067 -
Lal10g1104 512 MobiDBLite consensus disorder prediction 439 459 - -
Lal10g1104 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lal10g1104 512 PIRSF PPA2_B55 10 512 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Lal10g1104 512 SMART WD40_4 329 367 IPR001680 GO:0005515
Lal10g1104 512 SMART WD40_4 371 425 IPR001680 GO:0005515
Lal10g1104 512 SMART WD40_4 220 259 IPR001680 GO:0005515
Lal10g1104 512 SMART WD40_4 31 66 IPR001680 GO:0005515
Lal10g1104 512 SMART WD40_4 270 310 IPR001680 GO:0005515
Lal10g1104 512 SMART WD40_4 105 145 IPR001680 GO:0005515
Lal10g1104 512 SUPERFAMILY WD40 repeat-like 39 504 IPR036322 GO:0005515
Lal10g1104 512 Gene3D - 74 510 IPR015943 GO:0005515
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 231 258 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 259 286 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 287 315 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 316 343 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 344 371 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 372 397 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 424 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 481 510 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Lal10g1104 512 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1104 Lal-Chr10 17890023 17897233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1104 K04354 - gmx:100799449 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1104 10 17890023 17897233 Lal25g0316 25 2161149 2168775 ECH
Lal10g1104 10 17890023 17897233 Lal10g1104 10 17890023 17897233 ECH
Lal25g0316 25 2161149 2168775 Lal10g1104 10 17890023 17897233 LSH
Lal10g1104 10 17890023 17897233 Lal8g0276 8 1849861 1856832 LSH
Lal10g1104 10 17890023 17897233 Lal20g1109 20 15265319 15277263 PCT
Lal10g1104 10 17890023 17897233 Lal1g1355 1 15340587 15349274 PCT
Lal20g1109 20 15265319 15277263 Lal10g1104 10 17890023 17897233 PCT
Lal1g1355 1 15340587 15349274 Lal10g1104 10 17890023 17897233 PCT