Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1109 ATGTTTCAACTGAAAATCCAAAGAATAAAGCCGTTGATTTCGTTTACCGGAGAAATGAACGGTGGCGATGGGGTCGCTGCTGATGCTTCTCCGGCGGGTCCACCGCAACCTCTGGAGTGGAAATTCTCGCAGGTTTTTGGTGAACGTTCGGCTGGTGAAGAAGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTAGAGTAGTTCTCTTTGATAGGACAGATGCAAAAGATCATGGTGGATCAAGAAGCGATTTGGAGAGGATGGACTATTCTGCAAATAGGCATCCCGAGTTCCATTATAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGACTACCTTAAGAGCTTGGAAATCGAAGAGAAAATAAACAAAATAAAGTGGTGTCAAACAGCTAATGGTGCTCTCTTCCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCCGACATGAATGTCGACCCTTCAAAAGCAATGGGGAATGGTTCTATTGCCAGTTCAAGTAGTTCCAGTAACTCTAGGCCGCATATTGCTAATGGAGGATCTCCAGATAGATCATACAATTATCCAAGCAACGACTTCTCATTTCCACCTGGAGGCATACCTTCACTAAGATTACCCTCGGTAACCAGCCATGAGACCAGTTTGATGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATATCAAATAACAGCGATGGTGAAACTTTCATATCAGCTGATGATCTCCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATTTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATATATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGATTTGCGGCAGTCAGCATTATGTGATTCTCATGCTAAAATATTTGAGGAACAAGAGCCCCATGGTTCCAGATCATTTTTTACCGAGATAATTGCATCTATCTCTGACATAAAGTTCGGGAAGGAGGGAAGATATATACTAAGCCGTGATTACATGACTTTAAAGTTATGGGACATCAATATGGATTCTGGCCCGGTTGCAACGTTCCAGGTTCACGAGTATTTAAGACCAAAGCTTTGTGATTTATATGAAAACGATTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGCGGTGACGGATTGCGTGTTGCAACTGGTTCTTACAGCAATCTATTCCGCGTGTTTGGTTGTGCCCCGGGAAGTACCGAGGCTACGACTCTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCATTCTAGATCGCTGGGAAACACTGGTGTCGACGCAAACGGGAATTCTTTCGACTTTACAACAAAGTTGCTGCATTTAGCATGGCATCCAAGTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATAATTTAA 1557 0.4117 MFQLKIQRIKPLISFTGEMNGGDGVAADASPAGPPQPLEWKFSQVFGERSAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFDRTDAKDHGGSRSDLERMDYSANRHPEFHYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNVDPSKAMGNGSIASSSSSSNSRPHIANGGSPDRSYNYPSNDFSFPPGGIPSLRLPSVTSHETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNILAYSSSKGSIRLVDLRQSALCDSHAKIFEEQEPHGSRSFFTEIIASISDIKFGKEGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTHSRSLGNTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYII 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1109 518 MobiDBLite consensus disorder prediction 177 218 - -
Lal20g1109 518 MobiDBLite consensus disorder prediction 185 218 - -
Lal20g1109 518 Gene3D - 55 219 IPR015943 GO:0005515
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 65 85 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 112 140 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 141 169 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 254 281 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 282 309 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 310 338 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 339 366 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 367 394 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 395 420 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 421 447 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 489 518 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 Pfam WD domain, G-beta repeat 246 282 IPR001680 GO:0005515
Lal20g1109 518 SMART WD40_4 125 165 IPR001680 GO:0005515
Lal20g1109 518 SMART WD40_4 394 448 IPR001680 GO:0005515
Lal20g1109 518 SMART WD40_4 51 86 IPR001680 GO:0005515
Lal20g1109 518 SMART WD40_4 293 333 IPR001680 GO:0005515
Lal20g1109 518 SMART WD40_4 243 282 IPR001680 GO:0005515
Lal20g1109 518 PIRSF PPA2_B55 32 518 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 125 139 IPR018067 -
Lal20g1109 518 Gene3D - 233 514 IPR015943 GO:0005515
Lal20g1109 518 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 19 517 - -
Lal20g1109 518 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 19 517 IPR000009 GO:0000159|GO:0019888
Lal20g1109 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 252 266 IPR018067 -
Lal20g1109 518 SUPERFAMILY WD40 repeat-like 59 513 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1109 Lal-Chr20 15265319 15277263 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1109 K04354 - gmx:100799449 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1355 1 15340587 15349274 Lal20g1109 20 15265319 15277263 ECH
Lal20g1109 20 15265319 15277263 Lal20g1109 20 15265319 15277263 ECH
Lal20g1109 20 15265319 15277263 Lal1g1355 1 15340587 15349274 LSH
Lal25g0316 25 2161149 2168775 Lal20g1109 20 15265319 15277263 PCT
Lal10g1104 10 17890023 17897233 Lal20g1109 20 15265319 15277263 PCT
Lal8g0276 8 1849861 1856832 Lal20g1109 20 15265319 15277263 PCT
Lal20g1109 20 15265319 15277263 Lal25g0316 25 2161149 2168775 PCT
Lal20g1109 20 15265319 15277263 Lal10g1104 10 17890023 17897233 PCT
Lal20g1109 20 15265319 15277263 Lal8g0276 8 1849861 1856832 PCT