Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0316 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGCCCACCAAACCCACTGGATTGGAAATTCTCGCAGGTTTTCGGAGAACGTACGGCAGGGGAAGAGGTTCAAGAAGTGGACATAATTTCTGCTATCGAATTTTACAAGTCCGGTGATTATCTTGCTACTGGTGATCGCGGTGGTCGAGTTGTTCTCTTTGAAAGGACAGATACAAAAGATCATGGTGGATCAAGAAGAGATTCGGAGAGAATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGATTATCTTAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACATCTAATGGTGCCCTCTTTCTTCTTTCTACAAATGATAAAACCGTCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAAAAAATTTCTGAGATGAATGTCGACCCTTTGAAAGGAAAGGGAAATGGCTCTATTGCCAGTTCAAGTAGTTCCGCGATTCATCTTGCAAATGGAGGATCTCCAGAAGGATACCTAAGCAATGATTTCTCTTTTCCACCAGGAGGCATACCATCGCTAAGATTACCCATGAACCTTATTAAGGATGTTAAGCAACTTGCGGACCCACAACTATTAATACTTCATAACATGCAATCTGTAAGTAGCCAAGAAACCAGCTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCCATTTCAAATAACAGCGATGGTGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCTATTCGTCTTGTTGACTTGAGGCAATCAGCATTATGTGATTCTTATGCCAAACTACTCTTACAAGCAATAACCTGGTACAGATTCGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTTACAGAGATTATTGCTTCTATCTCAGATATAAAATTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATTAATATGGATTCAGGGCCAGTCGCAACTTTTCAGGTTCATGAGTATTTACGACCTAAGCTTTGTGATTTATATGAAAATGACTCAATCTTTGATAAATTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTAGCCACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGAAGTGCTGAGGCGACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAATAGTATAACAAGAGTTGTAAGACGAGGAGCTGAAACCCCTGGTGTTGATGCAAATGGCAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAAAATGCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCCTAA 1623 0.4122 MNGGDEVVAAPAGPPNPLDWKFSQVFGERTAGEEVQEVDIISAIEFYKSGDYLATGDRGGRVVLFERTDTKDHGGSRRDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTSNGALFLLSTNDKTVKFWKVQEKKVKKISEMNVDPLKGKGNGSIASSSSSAIHLANGGSPEGYLSNDFSFPPGGIPSLRLPMNLIKDVKQLADPQLLILHNMQSVSSQETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSYAKLLLQAITWYRFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPTENAIACAAANSLYMYYA 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0316 540 Gene3D - 347 537 IPR015943 GO:0005515
Lal25g0316 540 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 248 262 IPR018067 -
Lal25g0316 540 Gene3D - 36 191 IPR015943 GO:0005515
Lal25g0316 540 PIRSF PPA2_B55 11 540 IPR000009 GO:0000159|GO:0019888
Lal25g0316 540 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lal25g0316 540 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lal25g0316 540 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lal25g0316 540 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 509 538 IPR000009 GO:0000159|GO:0019888
Lal25g0316 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 540 - -
Lal25g0316 540 SMART WD40_4 399 453 IPR001680 GO:0005515
Lal25g0316 540 SMART WD40_4 105 145 IPR001680 GO:0005515
Lal25g0316 540 SMART WD40_4 239 278 IPR001680 GO:0005515
Lal25g0316 540 SMART WD40_4 357 395 IPR001680 GO:0005515
Lal25g0316 540 SMART WD40_4 31 66 IPR001680 GO:0005515
Lal25g0316 540 SMART WD40_4 289 329 IPR001680 GO:0005515
Lal25g0316 540 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lal25g0316 540 MobiDBLite consensus disorder prediction 468 487 - -
Lal25g0316 540 Pfam WD domain, G-beta repeat 242 278 IPR001680 GO:0005515
Lal25g0316 540 SUPERFAMILY WD40 repeat-like 39 532 IPR036322 GO:0005515
Lal25g0316 540 Gene3D - 227 346 IPR015943 GO:0005515
Lal25g0316 540 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 540 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0316 Lal-Chr25 2161149 2168775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0316 K04354 - gmx:100799449 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1104 10 17890023 17897233 Lal25g0316 25 2161149 2168775 ECH
Lal25g0316 25 2161149 2168775 Lal25g0316 25 2161149 2168775 ECH
Lal25g0316 25 2161149 2168775 Lal10g1104 10 17890023 17897233 LSH
Lal25g0316 25 2161149 2168775 Lal8g0276 8 1849861 1856832 LSH
Lal25g0316 25 2161149 2168775 Lal20g1109 20 15265319 15277263 PCT
Lal25g0316 25 2161149 2168775 Lal1g1355 1 15340587 15349274 PCT
Lal20g1109 20 15265319 15277263 Lal25g0316 25 2161149 2168775 PCT
Lal1g1355 1 15340587 15349274 Lal25g0316 25 2161149 2168775 PCT