Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal7g1275 | ATGAACAGCTGTTCTAGAGGAGATTGGATGTGTGGTGTCTGCGAACACATAAACTTCAAGAAGAGGGATGCATGCCAAAGTTGTGGGTACCCCAAGTTTGGAGACCCTGACCCATCAACTTATCGAAGCAACAAGACTGAAACACTGGCTGGGGACTGGTTTTGCAACGCTATGAAGTGTGGAGCTCACAACTATGCCAGCAGATCAAACTGCTTTAGATGTGGTGTATTGAAGGATCAATATTCTTCTGGATATGGAGGAAACATGGCAGACTCTGGAGGACATTGCAGTTTACCCCCAGGATGGAAGAATGGTGACTGGATTTGCCCAAGATATGGTTGTGGAGTGCATAATTATGCTAGCAGGGCAGAATGCTTCAAATGCAAAATGCCCAAGGATTTTGGTGAGACAAGTTTAGTGGTGGTGCAGACTGAGAGAAGAAATTCTGGACACGTGCAATATCATTGA | 468 | 0.453 | MNSCSRGDWMCGVCEHINFKKRDACQSCGYPKFGDPDPSTYRSNKTETLAGDWFCNAMKCGAHNYASRSNCFRCGVLKDQYSSGYGGNMADSGGHCSLPPGWKNGDWICPRYGCGVHNYASRAECFKCKMPKDFGETSLVVVQTERRNSGHVQYH | 155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal7g1275 | 155 | SUPERFAMILY | Ran binding protein zinc finger-like | 99 | 134 | IPR036443 | - | |
| Lal7g1275 | 155 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 103 | 134 | IPR001876 | - | |
| Lal7g1275 | 155 | PANTHER | ZINC FINGER PROTEIN | 3 | 137 | - | - | |
| Lal7g1275 | 155 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 5 | 34 | IPR001876 | - | |
| Lal7g1275 | 155 | PANTHER | ZINC FINGER, RANBP2-TYPE-RELATED | 3 | 137 | - | - | |
| Lal7g1275 | 155 | SUPERFAMILY | Ran binding protein zinc finger-like | 44 | 79 | IPR036443 | - | |
| Lal7g1275 | 155 | SUPERFAMILY | Ran binding protein zinc finger-like | 5 | 35 | IPR036443 | - | |
| Lal7g1275 | 155 | Pfam | Zn-finger in Ran binding protein and others | 50 | 75 | IPR001876 | - | |
| Lal7g1275 | 155 | Pfam | Zn-finger in Ran binding protein and others | 103 | 132 | IPR001876 | - | |
| Lal7g1275 | 155 | Pfam | Zn-finger in Ran binding protein and others | 7 | 32 | IPR001876 | - | |
| Lal7g1275 | 155 | ProSitePatterns | Zinc finger RanBP2-type signature. | 9 | 28 | IPR001876 | - | |
| Lal7g1275 | 155 | Gene3D | - | 100 | 134 | - | - | |
| Lal7g1275 | 155 | Gene3D | - | 42 | 80 | - | - | |
| Lal7g1275 | 155 | Gene3D | - | 2 | 36 | - | - | |
| Lal7g1275 | 155 | ProSitePatterns | Zinc finger RanBP2-type signature. | 107 | 128 | IPR001876 | - | |
| Lal7g1275 | 155 | ProSitePatterns | Zinc finger RanBP2-type signature. | 53 | 74 | IPR001876 | - | |
| Lal7g1275 | 155 | SMART | zf_4 | 105 | 131 | IPR001876 | - | |
| Lal7g1275 | 155 | SMART | zf_4 | 51 | 77 | IPR001876 | - | |
| Lal7g1275 | 155 | SMART | zf_4 | 7 | 31 | IPR001876 | - | |
| Lal7g1275 | 155 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 49 | 80 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal7g1275 | Lal-Chr7 | 18167036 | 18167795 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal7g1275 | - | - | gmx:100792208 | 240.35 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal7g1275 | 7 | 18167036 | 18167795 | Lal18g0202 | 18 | 1679690 | 1681474 | ECH | |
| Lal7g1275 | 7 | 18167036 | 18167795 | Lal8g0216 | 8 | 1438777 | 1440076 | ECH | |
| Lal7g1275 | 7 | 18167036 | 18167795 | Lal4g0223 | 4 | 1403488 | 1405609 | ECH | |
| Lal7g1275 | 7 | 18167036 | 18167795 | Lal17g0239 | 17 | 1479046 | 1480638 | ECH | |
| Lal7g1275 | 7 | 18167036 | 18167795 | Lal7g1275 | 7 | 18167036 | 18167795 | ECH |