Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0202 ATGAATATGAGTAGGCCAGGGGATTGGAACTGTAGGTCATGCCAGCACTTGAATTTTCAGAGGAGAGAGTCATGCCAAAGATGTGGTGATTCAAAATATGGAGAAAGAGTTGATTTCATGGGTGGTTTTGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTTCTTCATTTGGCTTGATTAGTGGATCAGATGTTAGACCTGGTGATTGGTATTGTGCTGCTTCTAACTGTGGTACACATAACTTTGCTAGCCGCTCTACCTGCTTCAAGTGTGGTGCATTCAAGGATGACTTAGCTGCTGGAGGCTACAACAACAATGATATCTTGAGATCAAGAGGTTTTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGTGGTGGAAGACCTGGATGGAAATCTGGTGACTGGATATGCACTAGATCAGGATGCAATGAGCACAACTTTGCAAGCAGAATGGAATGTTTTAAATGCAGTGCTCCAAGAGACATGTACTAG 495 0.4667 MNMSRPGDWNCRSCQHLNFQRRESCQRCGDSKYGERVDFMGGFGGRGGGGGGGGSSFGLISGSDVRPGDWYCAASNCGTHNFASRSTCFKCGAFKDDLAAGGYNNNDILRSRGFGGGGGGGGGGGGGRPGWKSGDWICTRSGCNEHNFASRMECFKCSAPRDMY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0202 164 SUPERFAMILY Ran binding protein zinc finger-like 62 96 IPR036443 -
Lal18g0202 164 SUPERFAMILY Ran binding protein zinc finger-like 124 162 IPR036443 -
Lal18g0202 164 ProSitePatterns Zinc finger RanBP2-type signature. 136 157 IPR001876 -
Lal18g0202 164 PANTHER OS02G0203700 PROTEIN 2 163 - -
Lal18g0202 164 ProSitePatterns Zinc finger RanBP2-type signature. 70 91 IPR001876 -
Lal18g0202 164 ProSiteProfiles Zinc finger RanBP2 type profile. 66 97 IPR001876 -
Lal18g0202 164 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
Lal18g0202 164 PANTHER ZINC FINGER PROTEIN 2 163 - -
Lal18g0202 164 Gene3D - 128 163 - -
Lal18g0202 164 Gene3D - 2 34 - -
Lal18g0202 164 Gene3D - 61 97 - -
Lal18g0202 164 ProSiteProfiles Zinc finger RanBP2 type profile. 132 163 IPR001876 -
Lal18g0202 164 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Lal18g0202 164 SUPERFAMILY Ran binding protein zinc finger-like 4 34 IPR036443 -
Lal18g0202 164 Pfam Zn-finger in Ran binding protein and others 66 93 IPR001876 -
Lal18g0202 164 Pfam Zn-finger in Ran binding protein and others 5 30 IPR001876 -
Lal18g0202 164 Pfam Zn-finger in Ran binding protein and others 132 161 IPR001876 -
Lal18g0202 164 SMART zf_4 7 31 IPR001876 -
Lal18g0202 164 SMART zf_4 134 160 IPR001876 -
Lal18g0202 164 SMART zf_4 68 94 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0202 Lal-Chr18 1679690 1681474 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0202 - - gmx:100527535 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0202 18 1679690 1681474 Lal8g0216 8 1438777 1440076 ECH
Lal7g1275 7 18167036 18167795 Lal18g0202 18 1679690 1681474 ECH
Lal14g1844 14 18050329 18052470 Lal18g0202 18 1679690 1681474 ECH
Lal18g0202 18 1679690 1681474 Lal18g0202 18 1679690 1681474 ECH
Lal8g0216 8 1438777 1440076 Lal18g0202 18 1679690 1681474 PCT
Lal18g0202 18 1679690 1681474 Lal8g0216 8 1438777 1440076 PCT