Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0216 ATGAGTAGGCCAGGAGATTGGAACTGCAAGTCATGCCAGCACTTGAATTTTCAGAGGCGTGATTCATGCCAACGATGTGGGGACTCAAAATATGGGGATAGAGATGATTTTGGAAAGTTTGGAGGAAGAGGAGGATCTTCATTTGGGTTCAGTACTATTATTACTGGTTCAGATGTTAGGCCTGGTGACTGGTATTGTGCTGCACCTAACTGTGCTGCACATAACTTTGCTAGTCGTTCAAGCTGCTTCAAGTGTGGTGCTTTCAAAGATGACTTTTCTGGTGGATGCAATAGTAACAGCACTGCATTCAATCTTCATGCAGGAGCAGGTTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGCAGACCTGGATGGAAATCTGGTGATTGGATATGCAACAGATTTGGATGCAATGAGCACAACTTTGCTAGCAGAATGGTATGTTTTAAATGTTCTTCCCCAAGGGAGATGGATTGTAGCCAAGCAAGGGAGACTATAATTACTAGAGATGGTGCACAATTTCTTGATTAA 534 0.4419 MSRPGDWNCKSCQHLNFQRRDSCQRCGDSKYGDRDDFGKFGGRGGSSFGFSTIITGSDVRPGDWYCAAPNCAAHNFASRSSCFKCGAFKDDFSGGCNSNSTAFNLHAGAGFGGGGGGGGGGSRPGWKSGDWICNRFGCNEHNFASRMVCFKCSSPREMDCSQARETIITRDGAQFLD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0216 177 Pfam Zn-finger in Ran binding protein and others 127 157 IPR001876 -
Lal8g0216 177 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Lal8g0216 177 Pfam Zn-finger in Ran binding protein and others 60 87 IPR001876 -
Lal8g0216 177 PANTHER ZINC FINGER PROTEIN 1 161 - -
Lal8g0216 177 SMART zf_4 62 88 IPR001876 -
Lal8g0216 177 SMART zf_4 129 155 IPR001876 -
Lal8g0216 177 SMART zf_4 5 29 IPR001876 -
Lal8g0216 177 SUPERFAMILY Ran binding protein zinc finger-like 57 91 IPR036443 -
Lal8g0216 177 ProSiteProfiles Zinc finger RanBP2 type profile. 127 158 IPR001876 -
Lal8g0216 177 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lal8g0216 177 PANTHER OS02G0203700 PROTEIN 1 161 - -
Lal8g0216 177 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lal8g0216 177 SUPERFAMILY Ran binding protein zinc finger-like 119 158 IPR036443 -
Lal8g0216 177 Gene3D - 2 32 - -
Lal8g0216 177 Gene3D - 122 158 - -
Lal8g0216 177 Gene3D - 55 91 - -
Lal8g0216 177 ProSiteProfiles Zinc finger RanBP2 type profile. 60 91 IPR001876 -
Lal8g0216 177 ProSitePatterns Zinc finger RanBP2-type signature. 131 152 IPR001876 -
Lal8g0216 177 ProSitePatterns Zinc finger RanBP2-type signature. 64 85 IPR001876 -
Lal8g0216 177 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0216 Lal-Chr8 1438777 1440076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0216 - - gmx:100499847 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0202 18 1679690 1681474 Lal8g0216 8 1438777 1440076 ECH
Lal7g1275 7 18167036 18167795 Lal8g0216 8 1438777 1440076 ECH
Lal14g1844 14 18050329 18052470 Lal8g0216 8 1438777 1440076 ECH
Lal8g0216 8 1438777 1440076 Lal8g0216 8 1438777 1440076 ECH
Lal8g0216 8 1438777 1440076 Lal18g0202 18 1679690 1681474 PCT
Lal18g0202 18 1679690 1681474 Lal8g0216 8 1438777 1440076 PCT