Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0239 ATGAGTAGGCCAGGAGATTGGAACTGCAGGACATGCAACCACTTAAATTTTCAGAGAAGAGAATCATGCCAAAGATGCAGGGAACCAAGGGGCGCAGCTGACTTATACGGCGGTGGTGGCGGCAGCTTTGGTGGCAGAAGCTCTTCCTCTTTTGGTGGCTTCAGCTTCACTACTGGCCCTGATGTCCGCCCTGGTGACTGGTATTGCAGTCTGGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGTGGTGCCTCCAAGGAGGACTCCGCCACCGGAGGATTTGATGCGGACATGCCCCGCTTCAGAGGCTTTAACTTTGGCAGTGGTAGTGGTGGTTTAGGTGGCAGCAGCTCCACCCGTCCTGGCTGGAAATCCGGTGACTGGTTATGTACAAGGTCTGGATGCAACGAGCACAACTTCGCTAATAGAATGGAGTGCTACCGATGCAATGCACCCAGAGACTTAAGCACTACCAGATAA 498 0.5402 MSRPGDWNCRTCNHLNFQRRESCQRCREPRGAADLYGGGGGSFGGRSSSSFGGFSFTTGPDVRPGDWYCSLGNCGAHNFASRSSCFKCGASKEDSATGGFDADMPRFRGFNFGSGSGGLGGSSSTRPGWKSGDWLCTRSGCNEHNFANRMECYRCNAPRDLSTTR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0239 165 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Lal17g0239 165 ProSitePatterns Zinc finger RanBP2-type signature. 134 155 IPR001876 -
Lal17g0239 165 SUPERFAMILY Ran binding protein zinc finger-like 59 95 IPR036443 -
Lal17g0239 165 ProSiteProfiles Zinc finger RanBP2 type profile. 130 161 IPR001876 -
Lal17g0239 165 ProSiteProfiles Zinc finger RanBP2 type profile. 63 94 IPR001876 -
Lal17g0239 165 SUPERFAMILY Ran binding protein zinc finger-like 123 161 IPR036443 -
Lal17g0239 165 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lal17g0239 165 PANTHER ZINC FINGER PROTEIN 1 162 - -
Lal17g0239 165 ProSitePatterns Zinc finger RanBP2-type signature. 67 88 IPR001876 -
Lal17g0239 165 Gene3D - 58 95 - -
Lal17g0239 165 Gene3D - 122 160 - -
Lal17g0239 165 Gene3D - 2 32 - -
Lal17g0239 165 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 162 - -
Lal17g0239 165 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lal17g0239 165 SMART zf_4 65 91 IPR001876 -
Lal17g0239 165 SMART zf_4 132 158 IPR001876 -
Lal17g0239 165 SMART zf_4 5 29 IPR001876 -
Lal17g0239 165 Pfam Zn-finger in Ran binding protein and others 63 94 IPR001876 -
Lal17g0239 165 Pfam Zn-finger in Ran binding protein and others 130 159 IPR001876 -
Lal17g0239 165 Pfam Zn-finger in Ran binding protein and others 3 26 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0239 Lal-Chr17 1479046 1480638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0239 - - gmx:100811107 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0239 17 1479046 1480638 Lal17g0239 17 1479046 1480638 ECH
Lal7g1275 7 18167036 18167795 Lal17g0239 17 1479046 1480638 ECH
Lal14g1844 14 18050329 18052470 Lal17g0239 17 1479046 1480638 ECH
Lal17g0239 17 1479046 1480638 Lal4g0223 4 1403488 1405609 LSH