Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0223 ATGAACAGGCCAGGAGATTGGAACTGCAGGACATGCAAGCACATGAATTTCCAGAGAAGAGAATCGTGCCAAAGATGCGGGGAACCAAGGGGTGCAACTGACTTATACAGTGGTGGTGGTGGTGGTGGCGGCGCCAGCTTTGGTGGCAGAGGCTCTTCCTCATTTGGAACCTTCACTACTGGTCCTGATGTCCGCCCTGGTGATTGGTACTGCACGGTGGCCAACTGTGGAGCCCACAATTTCGCCAGCCGCTCAAGCTGTTTCAAGTGTGGTGCCTCCAAGGAGGACTCCATTACCGGAGGAGGATTTGATGCGGATATGCCACGCATGAGAGGCTTTGGATTTGGTGGTGGTGGTGGTGGTGTTGGCGGCGGTGGCAGCTCCACCCACCCTGGCTGGAAATCCGGGGACTGGTTATGTTCCAGGTCTGGATGCAATGAGCATAACTTTGCTAATAGAATGGAGTGCTACAGATGCAATGCACCAAGGGACTCAAACACTGCCAGATCTCCTTATCAATCCTAA 525 0.5371 MNRPGDWNCRTCKHMNFQRRESCQRCGEPRGATDLYSGGGGGGGASFGGRGSSSFGTFTTGPDVRPGDWYCTVANCGAHNFASRSSCFKCGASKEDSITGGGFDADMPRMRGFGFGGGGGGVGGGGSSTHPGWKSGDWLCSRSGCNEHNFANRMECYRCNAPRDSNTARSPYQS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0223 174 SMART zf_4 136 162 IPR001876 -
Lal4g0223 174 SMART zf_4 67 93 IPR001876 -
Lal4g0223 174 SMART zf_4 5 29 IPR001876 -
Lal4g0223 174 Gene3D - 2 32 - -
Lal4g0223 174 Gene3D - 127 166 - -
Lal4g0223 174 Gene3D - 60 97 - -
Lal4g0223 174 PANTHER OS02G0203700 PROTEIN 1 166 - -
Lal4g0223 174 SUPERFAMILY Ran binding protein zinc finger-like 61 97 IPR036443 -
Lal4g0223 174 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lal4g0223 174 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Lal4g0223 174 Pfam Zn-finger in Ran binding protein and others 134 163 IPR001876 -
Lal4g0223 174 Pfam Zn-finger in Ran binding protein and others 65 96 IPR001876 -
Lal4g0223 174 ProSitePatterns Zinc finger RanBP2-type signature. 69 90 IPR001876 -
Lal4g0223 174 SUPERFAMILY Ran binding protein zinc finger-like 127 166 IPR036443 -
Lal4g0223 174 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lal4g0223 174 ProSitePatterns Zinc finger RanBP2-type signature. 138 159 IPR001876 -
Lal4g0223 174 PANTHER ZINC FINGER PROTEIN 1 166 - -
Lal4g0223 174 ProSiteProfiles Zinc finger RanBP2 type profile. 134 165 IPR001876 -
Lal4g0223 174 ProSiteProfiles Zinc finger RanBP2 type profile. 65 96 IPR001876 -
Lal4g0223 174 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0223 Lal-Chr4 1403488 1405609 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0223 - - gmx:100799240 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0223 4 1403488 1405609 Lal4g0223 4 1403488 1405609 ECH
Lal7g1275 7 18167036 18167795 Lal4g0223 4 1403488 1405609 ECH
Lal14g1844 14 18050329 18052470 Lal4g0223 4 1403488 1405609 ECH
Lal17g0239 17 1479046 1480638 Lal4g0223 4 1403488 1405609 LSH