Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1200 ATGGTTGCTTTGGTTTCCCAAGACAATGTTGTGGCATTGGTTTCTCGTACTGGCAGGGAATTACAACGTTATAGAAAAGGTCGTCGCCAAGTTGTGGGATGCATACCATACAGATATAAAATTGGGGAGAAAAATTCCATGGACAGTGATGAAATTGAAGTTCTGGTTATTAGTTCTCAGAATCAGAAAGGAAAAGGGATGCTTTTTCCAAAGGGAGGTTGGGAATTAGACGAATCGAAAAAGGAGGCAGCTTTGAGAGAAACCATTGAAGAAGCTGGAGTTCGAGGCATTGTTGGGGGTAAATTGGGTAAATGGACTTTCAAGAGCAAGACACATGATACCTTCTATGAAGGATACATGTTCCCTCTACTTGTTCAAGAGCAGCTAGAATTCTGGCCCGAGCGTAATGTTCGTCAAAGAATATGGATGAGCGTCAGTGAAGCAAGAGAAGCTTGTCAACGCTGGTGGATGAAAGAAGCGCTAGAAAGACTAGTAAACCGTCTATCCAGTTCAAAACTTGGTCGCGAAAAACAAGTTCTGCCCTCTCTAAACTGCATTGGAGATGCCAGATCTGCTTTGTAA 582 0.4278 MVALVSQDNVVALVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSMDSDEIEVLVISSQNQKGKGMLFPKGGWELDESKKEAALRETIEEAGVRGIVGGKLGKWTFKSKTHDTFYEGYMFPLLVQEQLEFWPERNVRQRIWMSVSEAREACQRWWMKEALERLVNRLSSSKLGREKQVLPSLNCIGDARSAL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1200 193 ProSiteProfiles Nudix hydrolase domain profile. 27 165 IPR000086 -
Lal5g1200 193 SUPERFAMILY Nudix 21 168 IPR015797 -
Lal5g1200 193 Pfam NUDIX domain 51 163 IPR000086 -
Lal5g1200 193 CDD Nudix_Hydrolase_9 30 158 - -
Lal5g1200 193 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 14 168 - -
Lal5g1200 193 ProSitePatterns Nudix box signature. 72 93 IPR020084 GO:0016787
Lal5g1200 193 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 6 188 - -
Lal5g1200 193 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 6 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1200 Lal-Chr5 14772205 14774663 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1200 K07766 - gmx:100795999 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0226 24 1647403 1658329 Lal5g1200 5 14772205 14774663 ECH
Lal5g1200 5 14772205 14774663 Lal5g1200 5 14772205 14774663 ECH
Lal3g0524 3 3830017 3832248 Lal5g1200 5 14772205 14774663 LSH
Lal5g1200 5 14772205 14774663 Lal22g0284 22 1807050 1808960 PCT
Lal5g1200 5 14772205 14774663 Lal6g0307 6 1966445 1974779 PCT
Lal22g0284 22 1807050 1808960 Lal5g1200 5 14772205 14774663 PCT
Lal6g0307 6 1966445 1974779 Lal5g1200 5 14772205 14774663 PCT