Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0307 ATGGCCTTGGTTTCTCAAGATAACGTTATGGCACTGATTTCACGCACAGGCAGGGAGTTGCAGCGCTATAGAAAAGGACGTCGCCAAGTTGTGGGATGCATACCATACAGATATTCATTGGAGGCATCAAAAGAATTAGAAGTAATGGTAATTAGTTCTAAGAAAGGCAAAGCCATGCTATTCCCAAAGGGAGGGTGGGAGTTAGATGAATCAAAAAAGGAGGCAGCTTTGCGAGAAACCATTGAGGAAGCAGGTGTACGAGGCATTGTCGAGGCAAAATTGGGTAAGTGGAGCTTCAAGAGCAAAACCTATGACACTTTCTATGATGGCTACATGTTTCCTCTACTAGTTGAAGAGCAATTAGAGTTCTGGCCGGAGCAGCACGTTCGTCAGAGAATATGGATGAGCGTTTCTGAAGCAAAGGAAGCATGTCAACACTGGTGGATGAAAGAAGCTCTGGAGAGATTAGTAAATCGTCTCACCACTCATAAACTTGGTCGCATGAAACCAATTGTAGGAACAGCAAAAGATGTGCCTCAACAACAATCCTCTTACTCGTTAGGCAACGGTCTTGTGCAGCACAAAATCCACACTCAAGGTCAATATCTCCAACACAATTTAGTTTCCTCCATCAACATCATGGCCAAAACTAGGCAATTCCTCTCTCTATCATTCTTCATAATCTTTCTTCATTCTCTTGCCTTTTTCCCTTTCCAATCATTGTCATCATCACACACAAAGACTTACCTCTATGGTGGGTGCACTCAGCAAAGCTACACTCCAAACTCACCTTATGAGTCAAACCTCGACTCGCTCCTCACCTCCCTGGTCAACTCAGCCACATACTCTTCCTACAACAACTTCACAATCCTAGGGTCCACCCAACAGGACGCGGTATACGGCCTCTACCAATGCCGCGGTGACCTCTCCATGCCGGATTGTGCCACTTGCGTTGCCACCGCCGTCACACGCGCTGGTGACTTATGCCGACAGACGTGTGGCGGCGCGGTGCAGCTCGACGGCTGTTTTGTGAAGTATGACAATGCCACTTTCTTGGGGGTGGAGGACAAGACGGTGGTGCTGAAGAAGTGTGGACCCTCTGTGGGGTACAACCCGGAGGCTATGGGTAGCCGGGACGCTGTGCTGGCCGGGCTTGTGGGCTCCAGCGGGCCCTTCCGGGAGGGAGGGTCCGGTGGAGTACGCGGCATGGCACAGTGTACCGGAGACCTGAGCTTTGGGGAGTGCCAGGACTGTTTGTCGGAAGCGATATCACGGTTGAAGAGCGATTGTGGCACGGCGGATTATGGTGACATGTTCTTGGGAAAGTGCTATGCGAGATACAATACCGGTGGGGCCCACGATACCTCCAAGGCCCACGGTAAATCAAATAATGGAGGTGAGAAGACTTTTGCTATAATTATTGGTTTATTAGCAGGAGCAGCTATACTTATTGTTTTCTTAGCTTTCTTCAGCAAGATTTGTCTAACACGAGGGAAATAA 1500 0.488 MALVSQDNVMALISRTGRELQRYRKGRRQVVGCIPYRYSLEASKELEVMVISSKKGKAMLFPKGGWELDESKKEAALRETIEEAGVRGIVEAKLGKWSFKSKTYDTFYDGYMFPLLVEEQLEFWPEQHVRQRIWMSVSEAKEACQHWWMKEALERLVNRLTTHKLGRMKPIVGTAKDVPQQQSSYSLGNGLVQHKIHTQGQYLQHNLVSSINIMAKTRQFLSLSFFIIFLHSLAFFPFQSLSSSHTKTYLYGGCTQQSYTPNSPYESNLDSLLTSLVNSATYSSYNNFTILGSTQQDAVYGLYQCRGDLSMPDCATCVATAVTRAGDLCRQTCGGAVQLDGCFVKYDNATFLGVEDKTVVLKKCGPSVGYNPEAMGSRDAVLAGLVGSSGPFREGGSGGVRGMAQCTGDLSFGECQDCLSEAISRLKSDCGTADYGDMFLGKCYARYNTGGAHDTSKAHGKSNNGGEKTFAIIIGLLAGAAILIVFLAFFSKICLTRGK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0307 499 Gene3D - 379 450 IPR038408 -
Lal6g0307 499 Gene3D - 246 351 IPR038408 -
Lal6g0307 499 CDD Nudix_Hydrolase_9 29 150 - -
Lal6g0307 499 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 14 160 - -
Lal6g0307 499 ProSiteProfiles Gnk2-homologous domain profile. 247 351 IPR002902 -
Lal6g0307 499 Pfam NUDIX domain 48 155 IPR000086 -
Lal6g0307 499 ProSiteProfiles Nudix hydrolase domain profile. 26 157 IPR000086 -
Lal6g0307 499 ProSitePatterns Nudix box signature. 64 85 IPR020084 GO:0016787
Lal6g0307 499 Pfam Salt stress response/antifungal 397 449 IPR002902 -
Lal6g0307 499 Pfam Salt stress response/antifungal 254 348 IPR002902 -
Lal6g0307 499 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 223 495 - -
Lal6g0307 499 ProSiteProfiles Gnk2-homologous domain profile. 352 452 IPR002902 -
Lal6g0307 499 SUPERFAMILY Nudix 22 160 IPR015797 -
Lal6g0307 499 PANTHER PLASMODESMATA-LOCATED PROTEIN 5 223 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0307 Lal-Chr6 1966445 1974779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0307 214 488 Receptor kinase-like Gene Family AT5G40380 27.055 9.70e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0307 - - adu:107457936 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0284 22 1807050 1808960 Lal6g0307 6 1966445 1974779 LSH
Lal3g0524 3 3830017 3832248 Lal6g0307 6 1966445 1974779 PCT
Lal5g1200 5 14772205 14774663 Lal6g0307 6 1966445 1974779 PCT
Lal6g0307 6 1966445 1974779 Lal3g0524 3 3830017 3832248 PCT
Lal6g0307 6 1966445 1974779 Lal5g1200 5 14772205 14774663 PCT