Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0284 ATGGAGGCTTTTGTTTCCCAAGATAAAGTTGTAGCAATGGTTTCTCGGACAGGTAGGGAATTGCAGCGTTACAGAAAAGGACGACGCCAAGTCGTGGGTTTAAGTTTTATTATTTCAATGGCTACTAAACGTTTTCCAATTGTGCCTAGATGCATACCATACAGATATAAAAATGATGTGCAAACCTCATTGGAGTCATTAGAAGAATTACAAGTATTAATAATTACTTCTAAGAAAGGCAAAGCGATGCTATTTCCAAAGGGTGGTTGGGAGTTAGATGAATCAAAAAAGGAAGCAGCAGTGCGAGAAACCATAGAGGAAGCAGGCGTGCGAGGCATTGTTGAGGTGGGAAAATTGGGTAAGTGGAGCTTCAAAAGCAAAACCTATGACACTTTCTACGAAGGCTACATGTTCCCTCTACTTGTTCAAGAGCAATTAGAGTTCTGGCCGGAGCAGCATGTTCGTCAGAGAATATGGATGAGCATTTCTGAAGCAAAGGAAGTTTGTCAACACTGGTGGATGAAAGAAGCTCTGGAAAGACTAGTAAATCGTCTCACGGCTCAAAAATATGGTCGTGTAAAACAAGTTGTAGGTTCTGTACACAGCATAGAAGATGGCAAATTTGACTTGTCAATGGAGTAG 642 0.4112 MEAFVSQDKVVAMVSRTGRELQRYRKGRRQVVGLSFIISMATKRFPIVPRCIPYRYKNDVQTSLESLEELQVLIITSKKGKAMLFPKGGWELDESKKEAAVRETIEEAGVRGIVEVGKLGKWSFKSKTYDTFYEGYMFPLLVQEQLEFWPEQHVRQRIWMSISEAKEVCQHWWMKEALERLVNRLTAQKYGRVKQVVGSVHSIEDGKFDLSME 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0284 213 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 9 196 - -
Lal22g0284 213 Pfam NUDIX domain 71 180 IPR000086 -
Lal22g0284 213 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 9 196 - -
Lal22g0284 213 ProSitePatterns Nudix box signature. 88 109 IPR020084 GO:0016787
Lal22g0284 213 CDD Nudix_Hydrolase_9 51 175 - -
Lal22g0284 213 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 38 185 - -
Lal22g0284 213 ProSiteProfiles Nudix hydrolase domain profile. 55 182 IPR000086 -
Lal22g0284 213 SUPERFAMILY Nudix 42 184 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0284 Lal-Chr22 1807050 1808960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0284 K07766 - gmx:100798559 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0284 22 1807050 1808960 Lal6g0307 6 1966445 1974779 LSH
Lal3g0524 3 3830017 3832248 Lal22g0284 22 1807050 1808960 PCT
Lal5g1200 5 14772205 14774663 Lal22g0284 22 1807050 1808960 PCT
Lal22g0284 22 1807050 1808960 Lal3g0524 3 3830017 3832248 PCT
Lal22g0284 22 1807050 1808960 Lal5g1200 5 14772205 14774663 PCT