Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0239 ATGGCTATGACTATTCCCTCTCTAACACCTTCAGAAAAAAAACACTGGTGGCTCACCAATAGAAAGATTGTTGACAAATATATAAAAGATGCTAGGAGTCTCATTGCAACACAAGAACAAAGTGAAATTGTTTTAGCTCTTAATCTTCTAGATGCAGCTTTAGCTATTTCTCCACGTTTGGATCAAGCTCTTGAACTGAAAGCAAGATCTTTGGTTTATTTGCGACGGTTTAAAGATGTAGCTGATATGCTACAAGATTATATTCCAAGTTATAGAGTGACAAATGATGATTCAAGTTATGTTTCTTCTGATAGTTCTTCTCAGCAGCTTCTATCTTCTTCTTCTGAGTCACTAGAGAAGGATCAGATTTTCAAGTGTTTTTCTGTTTCTGAACTCAAGAAGAAGGTTATGGCTGGGATCAGTAAAAGTTGCAATAAGGAAGGGCAATGGAGATACTTGGTTTTGGGTGAAGCATGCTGCCATCTAGGCCTAATGGAAGATGCAATGGTTCTGCTCCAAACCGGAAAGCGCCTTGCGTCGGCTGCATTCCGCCGCGAGAGCGTGTGTTGGTCCGATGACAGCTTCACTATCCCATTCACAGGAGACACCACAAACCTGCCACAACAACCCTCCACTCCACCGCGTCCACCACTGATAGAATCTGATAACATCACCAACCTCCTCGCTCATATCAAGTTCCTCCTCCGCCGTCGAACTGCTGCCCTCGCAGCACTCGATGCCGGCCTCTACTCAGAGGCCATCCGCCATTTCTCCAAAATCCTTGATGGCCGCCGAAGTGCACCTCAGGGCTTCCTTGCCGAGTGCTGCATGCACAGAGCCTCAGCTTACCGCTCTTCAGGTCGAATTGCAGAGTCCATAGCTGACTGTAACCGTACCTTAGCCCTCGACCCAACTTGCATTCAAGCTCTTGAAACCAGAGCTGCCCTCTTCGAAACAATTCGATGCTTACCAGATTCTCTACATGATCTTGAACACTTGAAGCTCTTGTACAATTCAATCTTGCGTGATCGCAAGCTTCCCGGCCCTGCATGGAAGCGTCACAACGTGCGATACAGGGAAATTCCCGGAAAACTCAATGCCTTGACCACCAAGATCGAAGAACTGAAATCTAGGTTAGCTTCCGGCGAGAGTGGAAAGGTGGATTACTACGCATTGATTGGAGTAAGAAGAGGATGTTCACGATCCGAGTTAGAAAGGGCTCATGTGTTACTTACTTTAAGGCACAAACCCGATAAAGCTACTAACTTTATCGACCGATGTGAACTCGTGAACGAGCGTGATCTCGAAACGGTTAAAGAGAAAGCGAAAATGTCAGCATTTTTGCTATATAGATTGGTTCAGAAGGGTTACACAAGTGTGATGAGTAATATCATGGATGAGGAAATTGCTGAGAAACAAAGGAAGAAAACTTTACAAGCTGCTACACAAGCAATTCAAGTTCAGAAAACAAACCAACATGAGATTATGATGAATAATAAAGAAAAATTGGTGACAAAGAGAAACAACAACAACAACAACAATGTTTCAGTGGAAAATAAAACAAATATAACATCAACTACAGTGAATCCTGCAGTTTTCAAAGGTGTTTTTTGCCGTGATCTTAGTGTAGTTGGGAACTTGCTTTCACAAGTGGGGTTCAATAGACCAATTCCAATGAAGTATGAAGCATTGAGTTGCTAA 1701 0.4339 MAMTIPSLTPSEKKHWWLTNRKIVDKYIKDARSLIATQEQSEIVLALNLLDAALAISPRLDQALELKARSLVYLRRFKDVADMLQDYIPSYRVTNDDSSYVSSDSSSQQLLSSSSESLEKDQIFKCFSVSELKKKVMAGISKSCNKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFTIPFTGDTTNLPQQPSTPPRPPLIESDNITNLLAHIKFLLRRRTAALAALDAGLYSEAIRHFSKILDGRRSAPQGFLAECCMHRASAYRSSGRIAESIADCNRTLALDPTCIQALETRAALFETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLNALTTKIEELKSRLASGESGKVDYYALIGVRRGCSRSELERAHVLLTLRHKPDKATNFIDRCELVNERDLETVKEKAKMSAFLLYRLVQKGYTSVMSNIMDEEIAEKQRKKTLQAATQAIQVQKTNQHEIMMNNKEKLVTKRNNNNNNNVSVENKTNITSTTVNPAVFKGVFCRDLSVVGNLLSQVGFNRPIPMKYEALSC 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0239 566 PANTHER - 4 566 - -
Lal5g0239 566 Gene3D Tetratricopeptide repeat domain 17 517 IPR011990 GO:0005515
Lal5g0239 566 SMART tpr_5 273 306 IPR019734 GO:0005515
Lal5g0239 566 CDD DnaJ 388 422 IPR001623 -
Lal5g0239 566 SUPERFAMILY TPR-like 240 334 IPR011990 GO:0005515
Lal5g0239 566 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 4 566 - -
Lal5g0239 566 SUPERFAMILY Chaperone J-domain 384 422 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0239 Lal-Chr5 2088549 2092343 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0239 - - gmx:100808420 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0239 5 2088549 2092343 Lal5g0239 5 2088549 2092343 ECH
Lal3g1367 3 19447269 19450145 Lal5g0239 5 2088549 2092343 LSH
Lal5g0239 5 2088549 2092343 Lal12g0522 12 3709260 3712985 PCT
Lal5g0239 5 2088549 2092343 Lal13g0524 13 3385115 3388622 PCT
Lal5g0239 5 2088549 2092343 Lal24g0420 24 2979276 2982089 PCT
Lal12g0522 12 3709260 3712985 Lal5g0239 5 2088549 2092343 PCT
Lal13g0524 13 3385115 3388622 Lal5g0239 5 2088549 2092343 PCT
Lal24g0420 24 2979276 2982089 Lal5g0239 5 2088549 2092343 PCT