Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0524 ATGGCTGTCACTTCTCCCACTCTCAATGCCAAAGAAAACAAGTACTGGTGGCTCACAAACCGAAAGATTGCTGAGAAATATATGAGAGACGCTCGAAACCTCATTGCTATGCAAAATGAGAATGCGATCGTTTCGGCTTTGAACCTTGTTGACGCGGCTTTGGCTATATCTCCATGTTTAGACGAAGCTCTTGAACTAAGAGCAAGGTCTCTTTTATATCTAAGAAGGTTCAAAGAGGTAGCTGATATGCTTCAAGACTACATTCCAAGTATTAAAATGGCGAATGATGAATCAGGTTCTGCTTCTTCAGATAGTTCTTCTTCACAAACACTTTCAAGGGAAGGTGTGAATCTTATATCATCATCATCTAATGAACGGGATCAGAGTTTCAAGTGCTTCTCTGTTTTAGACTTGAAGAAGAAGGTGATGGCAAGACTCAGTAAAAATTACCAGAAAGAAGGGTATTGGAGATACGTGGTGTTAGGCAAAGCATGCTGCCATCTAGGATTAATGGAGGATGCAATGGTTCTTCTCCAAACCGGTAAACGCCTTGCCACCGCCGCATTCCGCCGTGAGAGTATATGCTGGTCCGACGACAGCTTTTCATTATCAACCATCGGAATAAACTCACAACCCTTAACCCCACCACGAACTCCACTTACAGAAACCGAATCCATCACCCATCTCCTTACCCACATTAAGCTTCTCTTACGCCGCCGTGCCTCCGCACTCGCTGCACTTGACGCCGGCCTTCACTCAGAAGCTATCCGACACTTATCGAAGCTTCTACACGGTCGCCGCTGCGCCCCACAAGGTTTCATTGCTGAATGCTACATGCACAGAGCAAGTGCTTATTATTCTTCAGGTCGCATTGCTGAGTCTATAGGTGATTGCAACCGCACCCTTGCTCTGGACCCAACTTGCATCCAAGCTTTGGAAACCAGAGCCTCCATTTTAGAAACAATTCGTTGTTACACTGATTCATTACACGACCTTGAACACTTGAAGCTCTTATACAACACAATCTTGCGTGATAGAAAGCTTCCAGGTCCTGCATGGAAGCGCCACAATGTGAGATACAGGGAGATTCCAGGGAAACTCTGTGCCCTTACAGTGAAAATTCAAGAATTGAAGAAAAGGGTTGCTTCTGGTGAAATTGGGAATGTTGATTATTATGCTTTGATTGGTTTAAGAAGAGGGTGTTCAAGATCAGAGTTACAAAGAGCTCATCTACTGTTATGTTTGAAGCATAAACCTGATCAGGCTACGAATTTTATCGATAGGTGCGAGCTCGCTGATGAATGCGATCTCGAATCAGTGACTGACAGGGCTAAGATAACAGCATTGTTGTTATATAGGTTGCTTCAAAAGGGTTATACTAATGTGATGCAAACTATTATGGAAGAGGAAGCAGCTGAAAAACAAAGGAAGAAAGCTGCATATGCTCTACAATTGCAACAACAAGCTGCTGAAGTGAATGAAAAAAAAACTGTGGAAAATAATAATAAGTGCTTAATATCTTCTCCTTCTATTGTGGATCCATCAGTGTTTCAGGGGGTGTTTTGCCGTGATCTTTCTGTGGTTGGAAACTTGCTTTCACAAGGTGGATTCAACCGTTCAATTCCAATGAAGTATGAAGCTTTGAGTTGCTAG 1653 0.4307 MAVTSPTLNAKENKYWWLTNRKIAEKYMRDARNLIAMQNENAIVSALNLVDAALAISPCLDEALELRARSLLYLRRFKEVADMLQDYIPSIKMANDESGSASSDSSSSQTLSREGVNLISSSSNERDQSFKCFSVLDLKKKVMARLSKNYQKEGYWRYVVLGKACCHLGLMEDAMVLLQTGKRLATAAFRRESICWSDDSFSLSTIGINSQPLTPPRTPLTETESITHLLTHIKLLLRRRASALAALDAGLHSEAIRHLSKLLHGRRCAPQGFIAECYMHRASAYYSSGRIAESIGDCNRTLALDPTCIQALETRASILETIRCYTDSLHDLEHLKLLYNTILRDRKLPGPAWKRHNVRYREIPGKLCALTVKIQELKKRVASGEIGNVDYYALIGLRRGCSRSELQRAHLLLCLKHKPDQATNFIDRCELADECDLESVTDRAKITALLLYRLLQKGYTNVMQTIMEEEAAEKQRKKAAYALQLQQQAAEVNEKKTVENNNKCLISSPSIVDPSVFQGVFCRDLSVVGNLLSQGGFNRSIPMKYEALSC 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0524 550 SUPERFAMILY TPR-like 242 336 IPR011990 GO:0005515
Lal13g0524 550 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 550 - -
Lal13g0524 550 Gene3D Tetratricopeptide repeat domain 218 348 IPR011990 GO:0005515
Lal13g0524 550 Coils Coil 482 502 - -
Lal13g0524 550 CDD DnaJ 390 424 IPR001623 -
Lal13g0524 550 SMART tpr_5 275 308 IPR019734 GO:0005515
Lal13g0524 550 PANTHER - 1 550 - -
Lal13g0524 550 SUPERFAMILY Chaperone J-domain 386 424 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0524 Lal-Chr13 3385115 3388622 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0524 - - gmx:106797171 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0524 13 3385115 3388622 Lal13g0524 13 3385115 3388622 ECH
Lal12g0522 12 3709260 3712985 Lal13g0524 13 3385115 3388622 LSH
Lal13g0524 13 3385115 3388622 Lal24g0420 24 2979276 2982089 LSH
Lal3g1367 3 19447269 19450145 Lal13g0524 13 3385115 3388622 PCT
Lal5g0239 5 2088549 2092343 Lal13g0524 13 3385115 3388622 PCT
Lal13g0524 13 3385115 3388622 Lal3g1367 3 19447269 19450145 PCT
Lal13g0524 13 3385115 3388622 Lal5g0239 5 2088549 2092343 PCT