Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0522 ATGTTCCGAAGATTGAATCATCGTCATCATTCATCGTATTTTGTTCTGCTACAACACCATCTACCAACAATGGCTGTAACTTCTTCATATCTCAATGCCCCAGAAAAGAAGCACTGGTGGCTCACCAACCGAAAGATTGTTGAGAAATATCTGAAAGATGCACGCAATCTCATCGCGACACAAGAAGATAATGAGATCGTTTCGGCGTTGAGTATTGTTGACGCGGCTTTGGCTATTTATCCACGTTTAGAACAAGGTCTTGAACTTAGAGCAAGGTCTCTTTTATATCTGCGAAGATTCAAAGAGGTAGCTGATATGCTTCAAGACTATATTCCTAGTCTGAAAATGGCGAACGATGACTCGGGTTCTCTTTCTTCAGATAGTTCTTCTCAGACACTTTCAAGGGAAGGTGTGAATCTTCTCTCATACTCGGTTCAAAGGGATCAAAGTTTCAAGTGCTTCTCTATTTCAGAATTGAAGAAAAAAGTCATGGCAGGACTCAGTAAAAATTACGACAAAGAAGGGCATTGGAGATACTTGGTGTTGGGCAAAGCATGCTGCCACCTAGGACTAATGGAAGATGCAATGGTTCTTCTCCAAACCGGTAAACGCCTAGCCAGCGCCGCACACCGCCGTGAGAGTATATGCTGGTCCGACGACAGCTTCTCATTATCAACCATAAACATTAATTCACAACCCTCAACCCCACCACTAACCCCACTTACAGAGACCGAATCCATCACCCATCTCCTTACACACATCAAACTCCTCCTACGGCGTCGCGCCTCCGCAATCGCCGCCCTTGACGCCGGTCTCCATTCAGAGGCCATTCGGCACTTCTCAAAACTCCTTGACGGACGCCGGTGCGCTCCACAGGGCTTCCTCGCTGAATGCTACATGCACAGAGCCAATGCTTATCATTCTTCAGGTCGAATTGCAGAGTCTATAGGTGATTGCAACCGCACCCTAGCCTTAGACCCCACTTGCATCCAAGCTCTTGAAACAAGGGCCTCCATTTTAGAAACAATTCGATGCTACACTGATTCATTGCACGACCTTGAACATTTGAAGCTCTTATACAACACAATATTGCGTGATAAAAAGCTTCCGGGTCCCGCGTGGAAGCACCACAATGTAAGGCACAGGGAGATACCGAGGAAGTTGTGTGCACTCAATGTAAAAATTCAAGAACTAAAGAAAAGGGTGGCTTCTGGAGAGGTTGGTAATGTAGATTACTATGCTTTGATTGGTTTAAGAAGAGGGTGTTCGAGATCTGAGTTGCAAAGGGCTCATCTATTGTTATGTTTGAAGCATAAACCTGATAAGGCTACGAATTTTATCGATCGATGCGAGCTTGCGAATGATCACGATCTAGAATCGATTAAAGACAGGGCTAAGATGTCAGCATTGTTGTTGTATAGGTTGCTTCAAAAGGGTCATGCTAATGTGATGCGAACAATTATGGATGAGGAGGCTGCTGAGAAACAAAACAATAAGAAAGATGCATTGATGGCTTTGCAATTGCAACAAAAAGCTGAAGAAGTGAATGAGAAAAAAAGGGTAGAAAATAAGAATAAGTGCTTAATATCTTCTGCTTCTATTGTAGACCCATCAGTGTTTCAAGGTGTGTTTTGTCGTGATCTTTCTGTGGTTGGTGATTTGCTTTCACAAGTTGGATTTAACCGTCCAATTACAATGAAGTATGAAGGTTTGAGTTGCTAA 1722 0.435 MFRRLNHRHHSSYFVLLQHHLPTMAVTSSYLNAPEKKHWWLTNRKIVEKYLKDARNLIATQEDNEIVSALSIVDAALAIYPRLEQGLELRARSLLYLRRFKEVADMLQDYIPSLKMANDDSGSLSSDSSSQTLSREGVNLLSYSVQRDQSFKCFSISELKKKVMAGLSKNYDKEGHWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAHRRESICWSDDSFSLSTININSQPSTPPLTPLTETESITHLLTHIKLLLRRRASAIAALDAGLHSEAIRHFSKLLDGRRCAPQGFLAECYMHRANAYHSSGRIAESIGDCNRTLALDPTCIQALETRASILETIRCYTDSLHDLEHLKLLYNTILRDKKLPGPAWKHHNVRHREIPRKLCALNVKIQELKKRVASGEVGNVDYYALIGLRRGCSRSELQRAHLLLCLKHKPDKATNFIDRCELANDHDLESIKDRAKMSALLLYRLLQKGHANVMRTIMDEEAAEKQNNKKDALMALQLQQKAEEVNEKKRVENKNKCLISSASIVDPSVFQGVFCRDLSVVGDLLSQVGFNRPITMKYEGLSC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0522 573 SUPERFAMILY Chaperone J-domain 407 445 IPR036869 -
Lal12g0522 573 SMART tpr_5 176 209 IPR019734 GO:0005515
Lal12g0522 573 SMART tpr_5 296 329 IPR019734 GO:0005515
Lal12g0522 573 SUPERFAMILY TPR-like 264 357 IPR011990 GO:0005515
Lal12g0522 573 PANTHER - 24 573 - -
Lal12g0522 573 Gene3D DnaJ domain 395 528 IPR036869 -
Lal12g0522 573 Gene3D Tetratricopeptide repeat domain 239 369 IPR011990 GO:0005515
Lal12g0522 573 ProSiteProfiles dnaJ domain profile. 411 492 IPR001623 -
Lal12g0522 573 CDD DnaJ 411 445 IPR001623 -
Lal12g0522 573 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 24 573 - -
Lal12g0522 573 Coils Coil 505 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0522 Lal-Chr12 3709260 3712985 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0522 - - qsu:112006838 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0522 12 3709260 3712985 Lal12g0522 12 3709260 3712985 ECH
Lal12g0522 12 3709260 3712985 Lal13g0524 13 3385115 3388622 LSH
Lal12g0522 12 3709260 3712985 Lal24g0420 24 2979276 2982089 LSH
Lal3g1367 3 19447269 19450145 Lal12g0522 12 3709260 3712985 PCT
Lal5g0239 5 2088549 2092343 Lal12g0522 12 3709260 3712985 PCT
Lal12g0522 12 3709260 3712985 Lal3g1367 3 19447269 19450145 PCT
Lal12g0522 12 3709260 3712985 Lal5g0239 5 2088549 2092343 PCT