Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0420 ATGGCTATCACTTCTCCTAGACTCAATGCTCCAGTAAAGAAGTACTGGTGGCTCACCAAACGAAAGATTGTTAAGAGATATATGAAAGAAGCACGAAGCCTCATGGCCACACAAGAAGAAAACGAGATCGCTTTAGCTTTGAGTTTTGTTAATGCAGCTCTAGCTATATATCCACGTTATGAAGAAGCTATTGAACTCAAAGCATGGTCTCTGTTACATTTGAGATGTTTCAGAGAGGTAGCTGATATGCTTCAAGATTACATTCCGAGTATGAAAATGGCGAACATGGAATTGGATTTTGTTTCTTCTGATTGTTATCCTCAGACACCTTCAAGAGAAGGTTTGGATCTTCTATCTTCTTATGAGGTTCAAAGGGTTCAGAGTTTCAGGTGCTTCTCTGTTTCAGAATTGAAGAAGAAGGTTATGGCAAGGTTCCGTAAAAGTTGCCAGAAAGAAGGGTATTGGAGATACTTGGTGTTAGGCAAAGCATGCTTCCATCTAGGACTATTAGAGGATGCAATGATTCTTCTCCAAACATGTAAACGCCTAGCCAGCGCCGCACTCCGCCGTGAGAGTATATGCTTGTCCGACGACAGTTTCTTAGTCTCAACCATCGACACAAACTCACAACCCTCAACCCCACCAAGAACACTACTTACAGAAACTGAATCCATTACCCACCTCCTCACTCACATCAAGTTCCTTCTCCGGCGCTGCGCCTCCGCACTCGCCGCCCTGAACGCCGGTCTATATTCTGAAGCCATCCGCCACTTCTCAAAGCTTCTAGACGGCCGCCGAAGTGCTCCACAGGGCTTCCTCACTGAATGCTACATGCACAGAGCTAATGCTTATCATTATTCAGGTCGCATTGTAGAGTGTATAAGTGATTGCAACCGTGCCCTTGCCTTAGACCCCACTTGCATTCAAGCTCTTGAAACAAGAGCCACCATTTTAGAAACAATTCGGTGCTACACTGATTCATTGCACGATCTTGAACACTTGAAGCTCTTGTACAACACCATCTTACGTGATAGAAAGCTTCCAGGTCCTGTATGGAAGCGTCACAACGTGAGGTACAGGGAGATTCCAGGGAAACTCTGTATACTTTCTGTGAAAATTCAAAAATTGAAGAAAAGGGTTGCTTCAGGTGAGGTTGGGAATGTTGATTACTATGCTTTGATTGGTTTAGTAAAAGGTTGTTCAAGATCAAAGTTAGAAAGGGCTTATCTTTTATTGTCTTTGAAACACAAGCCTGATAAAGCTTCCAATTTTATAGATAAGTGTGATCTTGCGGATGAACGCGATTTCGAATCGATTAAGGATAGAGCTAAGATGTCAGCATTGTTGTTGTATAGGTTGATTCAGAAGGGTTATGCTAATGTGATGCAAGCAATTGAGGATGAAGAAGGTGAAGAGAATGAGAAAATTTTGGTGGAAAATAATACAAAGTGTCTTATATCTTCTCCTTCTAATGTGGATCAATCTATGTTTCAAGGTTTGTTTTGTCGTGATCTTTCTGTGGTTGGGGACTTGATTTCACAAGTGGGATTAAACCGTCCAATTCCATTATTCCAATGA 1578 0.4208 MAITSPRLNAPVKKYWWLTKRKIVKRYMKEARSLMATQEENEIALALSFVNAALAIYPRYEEAIELKAWSLLHLRCFREVADMLQDYIPSMKMANMELDFVSSDCYPQTPSREGLDLLSSYEVQRVQSFRCFSVSELKKKVMARFRKSCQKEGYWRYLVLGKACFHLGLLEDAMILLQTCKRLASAALRRESICLSDDSFLVSTIDTNSQPSTPPRTLLTETESITHLLTHIKFLLRRCASALAALNAGLYSEAIRHFSKLLDGRRSAPQGFLTECYMHRANAYHYSGRIVECISDCNRALALDPTCIQALETRATILETIRCYTDSLHDLEHLKLLYNTILRDRKLPGPVWKRHNVRYREIPGKLCILSVKIQKLKKRVASGEVGNVDYYALIGLVKGCSRSKLERAYLLLSLKHKPDKASNFIDKCDLADERDFESIKDRAKMSALLLYRLIQKGYANVMQAIEDEEGEENEKILVENNTKCLISSPSNVDQSMFQGLFCRDLSVVGDLISQVGLNRPIPLFQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0420 525 PANTHER - 3 523 - -
Lal24g0420 525 Gene3D Tetratricopeptide repeat domain 210 346 IPR011990 GO:0005515
Lal24g0420 525 CDD DnaJ 389 441 IPR001623 -
Lal24g0420 525 SMART tpr_5 154 187 IPR019734 GO:0005515
Lal24g0420 525 SMART tpr_5 274 307 IPR019734 GO:0005515
Lal24g0420 525 SUPERFAMILY TPR-like 241 335 IPR011990 GO:0005515
Lal24g0420 525 Gene3D DnaJ domain 375 480 IPR036869 -
Lal24g0420 525 SUPERFAMILY Chaperone J-domain 385 423 IPR036869 -
Lal24g0420 525 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 523 - -
Lal24g0420 525 ProSiteProfiles dnaJ domain profile. 389 470 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0420 Lal-Chr24 2979276 2982089 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0420 - - gmx:100800231 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0420 24 2979276 2982089 Lal24g0420 24 2979276 2982089 ECH
Lal12g0522 12 3709260 3712985 Lal24g0420 24 2979276 2982089 LSH
Lal13g0524 13 3385115 3388622 Lal24g0420 24 2979276 2982089 LSH
Lal3g1367 3 19447269 19450145 Lal24g0420 24 2979276 2982089 PCT
Lal5g0239 5 2088549 2092343 Lal24g0420 24 2979276 2982089 PCT
Lal24g0420 24 2979276 2982089 Lal3g1367 3 19447269 19450145 PCT
Lal24g0420 24 2979276 2982089 Lal5g0239 5 2088549 2092343 PCT