Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0327 ATGTCTTCTTCATCGGAGCGTGTAGATCTTGACGGCAACCAAATAAAGGCAATTACAATCTGCATGATCGGCGCCGGTGGTTTCATCGGTTCTCACCTATGCGAGAAACTCATGAACGAGACACCACACAAGGTTCTTGCCTTGGATGTTTACAACGATAAGATCAAACACCTCTTGGAACCCGATAATCTACCTTGGCACGGTCGCATCCACTTCCACCGTCTCAATATCAAACACGATTCTAGACTCGAAGGCCTCATCAAGATGTCAGATCTGACTATAAATCTGGCTGCAATTTGTACTCCGGCGGATTACAATACACGACCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCTGTGGTAAAGTACTGTTCGGAAAATAACAAAAGGCTCATTCATTTCTCTACATGTGAAGTGTATGGGAAAACGATTGGAAGCTTTCTCCCTAAAGATAGTCCTCTTCGTCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGAGTCTCCATGCATTTTTGGTTCAATTGAAAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAGTTGATTGAGAGGCTGATTTATGCTGAAGGTGCTGAAAATGGTATGGATTTCACAATTGTGAGGCCTTTTAACTGGATTGGACCTCGGATGGATTTCATTCCCGGCGTTGATGGTCCAAGTGAGGGTGTTCCTCGTGTTCTGGCTTGCTTTAGCAATAATCTTCTCAGAGGAGAGCCTCTCAAGCTTGTGGATGGTGGCCAATCCCAGCGAACCTTTGTTTACATTAAGGACGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGCCAGGGCCAATGGACATATCTTTAATGTGGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTAGCTGAAATGATGATTCAGGTTTACTCAAAGGTAAGTGGAGAACAAACCCCTGAAACACCTACAATTGATGTGAGCTCAAAAGAATTTTATGGCGAGGGATACGATGACAGTGATAAGAGAATTCCTGACATGACCATAATAAACAAGCAGCTTGGATGGAATCCCAAGACCTCACTTTGGGATCTGCTTGAATCTACTCTCACTTATCAGCACAGGACATATGCAGAAGCCATCAAGAAAGTCATTGCAAAACCAATTGCAACTTAA 1170 0.4325 MSSSSERVDLDGNQIKAITICMIGAGGFIGSHLCEKLMNETPHKVLALDVYNDKIKHLLEPDNLPWHGRIHFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGMDFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMIQVYSKVSGEQTPETPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPIAT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0327 389 Pfam NAD dependent epimerase/dehydratase family 20 290 IPR001509 -
Lal2g0327 389 PANTHER - 7 388 - -
Lal2g0327 389 CDD Arna_like_SDR_e 19 374 IPR045869 GO:0016831
Lal2g0327 389 Gene3D - 18 380 - -
Lal2g0327 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 372 IPR036291 -
Lal2g0327 389 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 7 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0327 Lal-Chr2 1979588 1983279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0327 17 384 Miscellaneous Gene Families AT1G02000 20.408 4.69e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0327 K12449 - gmx:102667779 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0327 2 1979588 1983279 Lal2g0327 2 1979588 1983279 ECH
Lal1g0412 1 2543755 2544762 Lal2g0327 2 1979588 1983279 LSH
Lal2g0327 2 1979588 1983279 Lal9g0308 9 1988588 1991654 LSH
Lal25g0216 25 1475608 1482419 Lal2g0327 2 1979588 1983279 PCT
Lal10g1205 10 18464731 18472181 Lal2g0327 2 1979588 1983279 PCT
Lal2g0327 2 1979588 1983279 Lal25g0216 25 1475608 1482419 PCT
Lal2g0327 2 1979588 1983279 Lal10g1205 10 18464731 18472181 PCT