Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1205 ATGGCTTCTTCTACTTCTACTCGAGTAGATCTGGATGGGAACCCCATTAATGCAATCACCATATGCATGATCGGTGCAGGTGGGTTCATTGGGTCACACCTATGCGAGAAGCTGATGCATGAGACATCACACAAGGTTCTTGCTTTGGATGTCTACAATGATAAGATCAAACATCTCTTGGAACCCGATACTCTCCCATGGCATGGTCGAATCCAATTCCATCGCCTCAATATTAAGCAAGATTCAAGACTCGAAGGTCTTATCAAAATGGCAGATCTGACAATTAATCTTGCTGCTATATGCACTCCTGCGGATTACAACACACGCCCTTTGGACACCATTTATAGCAACTTCATTGATGCGCTTCCTGTGGTGAAGTACTGTTCTGAAAACAACAAGCGTCTCATTCATTTCTCTACTTGTGAAGTGTATGGGAAAACCATTGGGAGCTTTCTCCCAAAAGATAGCCCTCTTCGTCAGGATCCTGCATACTATCTTCTTAAAGAAGATGAGTCTCCATGCATTTTTGGTTCCATTGAAAAGCAGAGATGGTCTTATGCCTGTGCAAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGCATGGACTTCACAATTGTTAGACCTTTTAATTGGATTGGACCAAGAATGGATTTCATTCCAGGCATTGATGGTCCAAGTGAAGGTGTTCCACGGAATCTCCTCCGTGGGGAGCCTCTGAAGCTCGTGGATGGTGGCCAATCCCAGAGGACTTTTGTTTATATTAGGGATGCTATCGAAGCTGTCTTGTTGATGATTGAAAATCCCGCCCGGGCCAATCGGCATATTTTTAATGTGGGTAACCCAAACAATGAGGTCACAGTCAAGCAGCTTGCTGAAATGATGACTCAGGTTTACTCTAAGGTAAGTGGAGAGCCTTCTTTGGAAAGTCCTACAATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGATATGACCATAATTAACAAGCAACTTGGCTGGAACCCAAAGACTTCCCTTTGGGACCTGCTTGAATCCACTCTCACCTATCAGCACAGGACTTATGCTGAAGCCATGAAGAAAGTCATTGGAAAACCTCTTGCAAGTAAAGCTTAA 1158 0.4352 MASSTSTRVDLDGNPINAITICMIGAGGFIGSHLCEKLMHETSHKVLALDVYNDKIKHLLEPDTLPWHGRIQFHRLNIKQDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYLLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGMDFTIVRPFNWIGPRMDFIPGIDGPSEGVPRNLLRGEPLKLVDGGQSQRTFVYIRDAIEAVLLMIENPARANRHIFNVGNPNNEVTVKQLAEMMTQVYSKVSGEPSLESPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAMKKVIGKPLASKA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1205 385 CDD Arna_like_SDR_e 20 368 IPR045869 GO:0016831
Lal10g1205 385 Pfam NAD dependent epimerase/dehydratase family 21 284 IPR001509 -
Lal10g1205 385 Gene3D - 19 375 - -
Lal10g1205 385 PANTHER - 7 382 - -
Lal10g1205 385 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 7 382 - -
Lal10g1205 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 366 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1205 Lal-Chr10 18464731 18472181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1205 17 376 Miscellaneous Gene Families AT1G02000 20.519 4.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1205 K12449 - dcr:108223530 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1205 10 18464731 18472181 Lal10g1205 10 18464731 18472181 ECH
Lal25g0216 25 1475608 1482419 Lal10g1205 10 18464731 18472181 LSH
Lal10g1205 10 18464731 18472181 Lal1g0412 1 2543755 2544762 PCT
Lal10g1205 10 18464731 18472181 Lal2g0327 2 1979588 1983279 PCT
Lal10g1205 10 18464731 18472181 Lal9g0308 9 1988588 1991654 PCT
Lal1g0412 1 2543755 2544762 Lal10g1205 10 18464731 18472181 PCT
Lal2g0327 2 1979588 1983279 Lal10g1205 10 18464731 18472181 PCT
Lal9g0308 9 1988588 1991654 Lal10g1205 10 18464731 18472181 PCT