Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0811 ATGGGTCAAGGAACTCCCGGTGGTTTAAATCGCCAAGGCGGAGACCGAAAACCTGACGGCGGCGACAAGAAGGACAAGAAATTCGACCCACCGGCTCCACCTGCTCGAGTAGGCCGAAAGCAGCGTAAACAAAAGGGTCCCGATGCGGCGGCACGGTTACCAACAGTGACACCGGTGACGAAGTGCAAACTGAAACTCCTAAAGCTAGAGAGAGTGAAGGACTACCTATTGATGGAAGAGGAATTCGTAGCGAATCAGGAACGCCTCAAGCCTCAAGAAGAGAAAGCAGAAGAAGATAGATCTAAGGTTGATGATCTTAGAGGCTCACCAATGAGTGTTGGAAATCTTGAAGAGCTTATTGATGAGAATCATGCTATTGTTTCTTCTTCGGTGGGGCCTGAATATTATGTTGGGATTTTATCTTTTGTTGATAAGGATCAATTAGAGCCTGGTTGTTCTATTTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTAATGAAGGTTGAAAAGGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCCCAAATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTTACACATCCTGAATTATATGAAGATATTGGTATCAAGCCCCCAAAGGGTGTCATATTATATGGAGAACCTGGAACAGGGAAGACCTTGCTTGCAAAGGCTGTTGCAAACTCAACATCAGCAACGTTCTTACGAGTTGTTGGTAGTGAATTGATACAAAAATACCTGGGTGATGGTCCAAAACTCGTGAGGGAACTTTTCAGAGTTGCTGATGACCTTTCTCCTTCTATTGTCTTCATTGATGAGATTGACGCAGTTGGCACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAGAGGACCATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTTGCAACCAACAGAATCGAAAGTCTAGATCCAGCTTTGCTTCGACCTGGTCGAATAGACAGGAAAATAGAATTTCCTCTTCCTGACATCAAAACAAGGAGACGCATATTCCAGATCCACACATCAAGGATGACATTGGCTGATGATGTCAATTTGGAAGAATTTGTCATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAGCGCCGTATGAAGGTAACTCACCCTGACTTTAAGAAGGCAAAGGATAAAGTCATGTTTAAAAAGAAAGAAGGGGTTCCAGAAGGATTGTATATGTGA 1335 0.4322 MGQGTPGGLNRQGGDRKPDGGDKKDKKFDPPAPPARVGRKQRKQKGPDAAARLPTVTPVTKCKLKLLKLERVKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0811 444 MobiDBLite consensus disorder prediction 15 33 - -
Lal24g0811 444 MobiDBLite consensus disorder prediction 88 109 - -
Lal24g0811 444 Gene3D - 364 438 - -
Lal24g0811 444 CDD AAA 192 359 - -
Lal24g0811 444 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 79 431 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lal24g0811 444 Gene3D - 111 178 IPR012340 -
Lal24g0811 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 437 IPR027417 -
Lal24g0811 444 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 17 444 - -
Lal24g0811 444 MobiDBLite consensus disorder prediction 1 55 - -
Lal24g0811 444 Pfam ATPase family associated with various cellular activities (AAA) 226 359 IPR003959 GO:0005524|GO:0016887
Lal24g0811 444 Pfam AAA+ lid domain 381 424 IPR041569 -
Lal24g0811 444 SMART AAA_5 222 361 IPR003593 -
Lal24g0811 444 Gene3D - 179 359 IPR027417 -
Lal24g0811 444 MobiDBLite consensus disorder prediction 88 106 - -
Lal24g0811 444 ProSitePatterns AAA-protein family signature. 329 347 IPR003960 GO:0005524|GO:0016887
Lal24g0811 444 PANTHER BNAA08G13550D PROTEIN 17 444 - -
Lal24g0811 444 Pfam Proteasomal ATPase OB C-terminal domain 113 166 IPR032501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0811 Lal-Chr24 6433251 6437799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0811 187 429 Miscellaneous Gene Families AT3G47060 44.355 5.45e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0811 K03062 - sind:105163492 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0811 24 6433251 6437799 Lal24g0811 24 6433251 6437799 ECH
Lal12g0880 12 7232526 7238567 Lal24g0811 24 6433251 6437799 LSH
Lal13g1075 13 8054159 8059584 Lal24g0811 24 6433251 6437799 LSH
Lal11g1109 11 14835171 14839296 Lal24g0811 24 6433251 6437799 PCT
Lal20g0051 20 365320 371246 Lal24g0811 24 6433251 6437799 PCT
Lal24g0811 24 6433251 6437799 Lal11g1109 11 14835171 14839296 PCT
Lal24g0811 24 6433251 6437799 Lal20g0051 20 365320 371246 PCT