Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1109 ATGGGTCAAGGAACACCGGGCGGTCTAAACCGGAAAGATCTTCAAGGCGATCGTAAACCGGACGGCAATGACAAAAAGGATAAGAAATTTGAACCGGCCGCACCACCAACCCGCGTCGGCCGGAAACAGCGCAAACAAAAAGGTCCTGAGGCGGCGGCGCGGTTACCAACGGTTACGCCGCTCTCGAAGTGCAAACTCCGGCTCCTGAAGCTAGAGAGAATAAAAGATTATCTCTTAATGGAAGAAGAGTTCGTTGCGAATCAAGAAAGGTTGAAGCCACAAGAGGAGAAAGCGGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGCTCACCGATGAGTGTGGGGAATTTGGAAGAACTGATTGATGAGAATCACGCCATTGTTTCGTCTTCTGTGGGACCAGAGTATTATGTTGGGATTTTGTCTTTCGTTGATAAGGATCAACTTGAGCCTGGTTGTTCTATTTTGATGCACAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTCATGAAGGTTGAGAAGGCTCCTTTGGAGTCGTATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTGACACATCCTGAACTGTATGAGGACATTGGTATCAAGCCTCCCAAGGGTGTCATTTTATATGGAGAGCCTGGAACTGGCAAGACATTGCTTGCAAAGGCTGTGGCGAACTCAACATCAGCAACATTTTTACGTGTTGTTGGAAGTGAATTGATACAAAAGTACTTGGGAGATGGTCCGAAGCTTGTGCGGGAACTTTTCCGAGTTGCTGATGATCTTTCCCCTTCTATCGTTTTCATTGATGAAATTGATGCAGTTGGTACTAAGAGGTATGATGCCCACTCTGGTGGAGAACGTGAAATTCAAAGGACTATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATCCTCGCAACCAACAGGATTGAAAGTCTTGATCCCGCTTTGCTGCGACCTGGTCGAATAGACAGGAAGATAGAATTTCCCCTTCCTGATATCAAAACAAGACGACGCATTTTCCAGATACACACATCAAGGATGACATTAGCTGATGATGTCAACCTAGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACTGAAGCTGGCTTGCTTGCTTTACGAGAACGCCGGATGAAGGTGACACATGCTGATTTTAAGAAGGCAAAGGATAAAGTGATGTTCAAGAAAAAAGAAGGGGTACCAGAAGGACTGTATATGTGA 1341 0.4459 MGQGTPGGLNRKDLQGDRKPDGNDKKDKKFEPAAPPTRVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1109 446 Pfam AAA+ lid domain 383 427 IPR041569 -
Lal11g1109 446 Gene3D - 113 180 IPR012340 -
Lal11g1109 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
Lal11g1109 446 MobiDBLite consensus disorder prediction 90 110 - -
Lal11g1109 446 MobiDBLite consensus disorder prediction 90 108 - -
Lal11g1109 446 PANTHER BNAA08G13550D PROTEIN 18 446 - -
Lal11g1109 446 MobiDBLite consensus disorder prediction 1 56 - -
Lal11g1109 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Lal11g1109 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Lal11g1109 446 CDD AAA 194 361 - -
Lal11g1109 446 Gene3D - 366 440 - -
Lal11g1109 446 MobiDBLite consensus disorder prediction 12 35 - -
Lal11g1109 446 Gene3D - 181 361 IPR027417 -
Lal11g1109 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Lal11g1109 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 446 - -
Lal11g1109 446 SMART AAA_5 224 363 IPR003593 -
Lal11g1109 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 81 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1109 Lal-Chr11 14835171 14839296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1109 189 431 Miscellaneous Gene Families AT3G47060 44.355 4.17e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1109 K03062 - gmx:100798835 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1109 11 14835171 14839296 Lal11g1109 11 14835171 14839296 ECH
Lal11g1109 11 14835171 14839296 Lal20g0051 20 365320 371246 LSH
Lal11g1109 11 14835171 14839296 Lal12g0880 12 7232526 7238567 PCT
Lal11g1109 11 14835171 14839296 Lal13g1075 13 8054159 8059584 PCT
Lal11g1109 11 14835171 14839296 Lal24g0811 24 6433251 6437799 PCT
Lal12g0880 12 7232526 7238567 Lal11g1109 11 14835171 14839296 PCT
Lal13g1075 13 8054159 8059584 Lal11g1109 11 14835171 14839296 PCT
Lal24g0811 24 6433251 6437799 Lal11g1109 11 14835171 14839296 PCT