Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1075 ATGGGTCAAGGAACTCCGGGTGGTTTAAACCGTCAAGGTGACCGAAAACCCGACTCCTCCGACAAAAAGGACAAGAAATTCGATCCACCACCTCCACCGTCACGCGTTGGCCGCAAGCAGCGTAAACAAAAAGGTCCCGATGCGGCGGCGCGTATACCAACAGTGACACCTGTGACGAAGTGCAAGCTTAGGCTTCTTAAACTGGAGCGAGTGAAGGACTATCTTTTGATGGAAGAAGAATTCGTTGCGAATCAAGAACGGCTTAAGCCTCAGGAAGAGAAAGCTGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGTTCACCAATGAGTGTTGGAAATCTTGAAGAGCTTATTGATGAGAATCATGCTATTGTTTCTTCATCGGTGGGGCCTGAGTATTATGTTGGAATTTTGTCTTTTGTTGATAAGGATCAATTAGAGCCTGGTTGTTCTATTTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTAATGAAGGTTGAAAAGGCTCCTTTGGAATCTTATGCTGACATTGGTGGTCTAGATTCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTGACACATCCTGAACTATATGAAGATATCGGTATCAAGCCTCCTAAGGGTGTCATATTATATGGAGAACCTGGAACTGGGAAGACTTTGCTTGCAAAGGCTGTTGCAAACTCAACATCAGCAACGTTCTTACGAGTTGTTGGCAGTGAGTTGATACAAAAGTACTTGGGAGACGGTCCAAAACTTGTGAGGGAACTTTTCAGAGTTGCTGATGACCTTTCTCCTTCTATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGGTATGATGCCCACTCAGGCGGAGAACGTGAAATTCAGAGGACCATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTTGCAACCAACAGAATTGAAAGCCTTGATCCAGCTTTGCTTCGACCTGGTCGAATAGACAGGAAAATAGAATTTCCTCTTCCTGATACAAAAACAAGGAGACGCATATTCCAGATCCACACATCAAGGATGACGTTAGCTGACGATGTCAACTTAGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGATTACTTGCTTTACGAGAACGCCGCATGAAGGTGACTCATGCTGACTTTAAGAAGGCAAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGAGTGCCAGAAGGACTGTATATGTGA 1332 0.4287 MGQGTPGGLNRQGDRKPDSSDKKDKKFDPPPPPSRVGRKQRKQKGPDAAARIPTVTPVTKCKLRLLKLERVKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDSQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDTKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1075 443 Gene3D - 363 437 - -
Lal13g1075 443 MobiDBLite consensus disorder prediction 87 105 - -
Lal13g1075 443 Pfam ATPase family associated with various cellular activities (AAA) 225 358 IPR003959 GO:0005524|GO:0016887
Lal13g1075 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 436 IPR027417 -
Lal13g1075 443 MobiDBLite consensus disorder prediction 14 32 - -
Lal13g1075 443 MobiDBLite consensus disorder prediction 87 108 - -
Lal13g1075 443 Pfam Proteasomal ATPase OB C-terminal domain 112 165 IPR032501 -
Lal13g1075 443 Gene3D - 178 358 IPR027417 -
Lal13g1075 443 PANTHER BNAA08G13550D PROTEIN 31 443 - -
Lal13g1075 443 Gene3D - 110 177 IPR012340 -
Lal13g1075 443 CDD AAA 191 358 - -
Lal13g1075 443 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 31 443 - -
Lal13g1075 443 Pfam AAA+ lid domain 380 424 IPR041569 -
Lal13g1075 443 SMART AAA_5 221 360 IPR003593 -
Lal13g1075 443 MobiDBLite consensus disorder prediction 1 53 - -
Lal13g1075 443 ProSitePatterns AAA-protein family signature. 328 346 IPR003960 GO:0005524|GO:0016887
Lal13g1075 443 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 78 430 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1075 Lal-Chr13 8054159 8059584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1075 186 428 Miscellaneous Gene Families AT3G47060 44.355 1.19e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1075 K03062 - gmx:100783293 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1075 13 8054159 8059584 Lal13g1075 13 8054159 8059584 ECH
Lal12g0880 12 7232526 7238567 Lal13g1075 13 8054159 8059584 LSH
Lal13g1075 13 8054159 8059584 Lal24g0811 24 6433251 6437799 LSH
Lal11g1109 11 14835171 14839296 Lal13g1075 13 8054159 8059584 PCT
Lal20g0051 20 365320 371246 Lal13g1075 13 8054159 8059584 PCT
Lal13g1075 13 8054159 8059584 Lal11g1109 11 14835171 14839296 PCT
Lal13g1075 13 8054159 8059584 Lal20g0051 20 365320 371246 PCT