Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0880 ATGGCTCGGCCAGACTTGGCCCAACGCCCATGTGCCATGCACCCCGCGCCTGTGGTGCTCCTGTCTCGCTTCGGCCAGGTCATACGCCTAACACCTGATGCATCTGTCTTGGCAATTAGAATTCCACAATTACTTGTTTCAAATCTGTTTCTGTCTCTCCTTTCTTTTCCTTCTGAAACCTCAAAAACAAACCTTGAATTCAGAAACCTAATGGGTCAAGGAACCCCAGGTGGTTTAAACCGCCAAGGTGGTCTCCCCGGAGACCGAAAACCCGACGGCGCCGACAAAAAGGACAAAAAATTCGACCCACCGGCTCCACCGACTCGAGTGGGCCGCAAACAACGTAAACAAAAGGGTCCCGATGCGGCGGCGCGTTTACCAACAGTAACGCCGGTGACGAAGTGTAAGCTGAGGCTTCTGAAGCTAGAGCGAGTGAAAGATTATCTTTTGATGGAAGAGGAATTCGTGGCGAATCAGGAACGGCTCAAGCCTCAGGAAGAGAAAGCTGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGTTCACCGATGAGTGTGGGAAATCTTGAAGAGCTTATTGATGAGAATCATGCTATTGTTTCTTCATCAGTGGGGCCTGAATATTATGTTGGGATTTTGTCTTTTGTTGATAAGGATCAGTTAGAGCCTGGGTGTTCTATTTTGATGCATAATAAGGTTCTTTCTGTTGTTGGACTTCTTCAAGATGAAGTTGATCCAATGGTCTCCGTAATGAAGGTTGAAAAGGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCCCAAATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTGACACATCCTGAACTATATGAAGATATCGGTATCAAGCCCCCTAAGGGTGTCATATTATATGGAGAACCTGGAACTGGCAAAACTTTGCTTGCAAAGGCTGTTGCAAACTCAACATCAGCAACGTTCTTACGAGTTGTTGGCAGTGAATTGATACAAAAGTACTTGGGAGATGGTCCAAAACTCGTGAGGGAACTTTTCAGAGTTGCTGATGACCTTTCTCCTTCTATCGTCTTCATTGATGAAATTGACGCAGTTGGTACAAAGAGGTATGATGCTAACTCTGGTGGAGAACGCGAAATTCAAAGGACCATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTGAAAGTGATTCTTGCAACCAACAGAATTGAAAGCCTCGATCCAGCTTTGCTTCGACCTGGTCGAATAGACAGGAAAATAGAATTTCCGCTTCCTGATATCAAAACAAGGAGACACATATTCCAGATCCACACATCAAGGATGACATTATCTGATGATGTCAACTTAGAAGAATTTGTTATGACTAAGGACGAGTTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGTATGAAGGTGACTCATGCCGACTTTAAGAAGGCGAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTATATGTGA 1554 0.4459 MARPDLAQRPCAMHPAPVVLLSRFGQVIRLTPDASVLAIRIPQLLVSNLFLSLLSFPSETSKTNLEFRNLMGQGTPGGLNRQGGLPGDRKPDGADKKDKKFDPPAPPTRVGRKQRKQKGPDAAARLPTVTPVTKCKLRLLKLERVKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRHIFQIHTSRMTLSDDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0880 517 CDD AAA 265 432 - -
Lal12g0880 517 Gene3D - 437 511 - -
Lal12g0880 517 Gene3D - 252 432 IPR027417 -
Lal12g0880 517 Pfam ATPase family associated with various cellular activities (AAA) 299 432 IPR003959 GO:0005524|GO:0016887
Lal12g0880 517 Pfam AAA+ lid domain 454 498 IPR041569 -
Lal12g0880 517 ProSitePatterns AAA-protein family signature. 402 420 IPR003960 GO:0005524|GO:0016887
Lal12g0880 517 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 152 504 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lal12g0880 517 Gene3D - 184 251 IPR012340 -
Lal12g0880 517 PANTHER BNAA08G13550D PROTEIN 89 517 - -
Lal12g0880 517 Pfam Proteasomal ATPase OB C-terminal domain 186 239 IPR032501 -
Lal12g0880 517 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 89 517 - -
Lal12g0880 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 510 IPR027417 -
Lal12g0880 517 MobiDBLite consensus disorder prediction 161 179 - -
Lal12g0880 517 SMART AAA_5 295 434 IPR003593 -
Lal12g0880 517 MobiDBLite consensus disorder prediction 88 106 - -
Lal12g0880 517 MobiDBLite consensus disorder prediction 69 127 - -
Lal12g0880 517 MobiDBLite consensus disorder prediction 161 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0880 Lal-Chr12 7232526 7238567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0880 260 502 Miscellaneous Gene Families AT3G47060 44.355 1.23e-54 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0880 K03062 - csv:101209885 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0880 12 7232526 7238567 Lal12g0880 12 7232526 7238567 ECH
Lal12g0880 12 7232526 7238567 Lal13g1075 13 8054159 8059584 LSH
Lal12g0880 12 7232526 7238567 Lal24g0811 24 6433251 6437799 LSH
Lal11g1109 11 14835171 14839296 Lal12g0880 12 7232526 7238567 PCT
Lal20g0051 20 365320 371246 Lal12g0880 12 7232526 7238567 PCT
Lal12g0880 12 7232526 7238567 Lal11g1109 11 14835171 14839296 PCT
Lal12g0880 12 7232526 7238567 Lal20g0051 20 365320 371246 PCT