Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0051 ATGGGTCAAGGAACACCAGGCGGTCTGAACCGGAAAGGTCTCCCAGGCGATCGTAAATCGGACGCCAATGACAAGAAGGACAAGAAATTTGAACCAGCTGCACCACCGGCCCGCGTCGGCCGAAAACAGCGCAAACAAAAAGGTCCTGAGGCGGCGGCGCGTATACCTACGGTTACGCCGCTCTCGAAATGCAAACTCCGACTCCTAAAACTGGAGAGAATAAAGGATTATCTCTTAATGGAAGAAGAATTCGTGTCTAATCAGGAACGGTTGAAGCCGCAAGAGGAGAAAGCTGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGCTCTCCAATGAGTGTGGGAAATTTGGAAGAGCTCATTGATGAAAATCACGCTATCGTTTCATCGTCGGTGGGGCCCGAGTATTACGTTGGGATTTTGTCCTTTGTTGATAAGGATCAGATTGAGCCTGGTTGTGCTATTTTGATGCACAACAAGACTGAATTGGTTAAGGTTAGATATGTTATAAGCCTGATTGAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGATGTCGATCCAATGGTCTCTGTCATGAAAGTTGAGAAGGCTCCTTTGGAGTCGTATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATCAAAGAAGCAGTTGAGCTTCCCTTAACACACCCCGAACTGTATGAGGACATCGGTATCAAGCCTCCCAAGGGTGTCATTTTATATGGAGAACCCGGAACTGGCAAGACATTGCTTGCAAAGGCTGTGGCAAATTCAACATCAGCAACATTCTTACGTGTTGTTGGAAGTGAGTTGATACAGAAGTACTTGGGAGACGGTCCAAAGCTTGTGAGGGAACTTTTCCGAGTTGCCGATGATCTTTCCCCTTCTATTGTCTTCATTGATGAAATCGATGCAGTTGGTACAAAGAGGTATGATGCCCACTCTGGTGGAGAACGTGAAATTCAAAGGACCATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTGATTCTCGCTACCAACAAAATTGAAAGTCTTGATCCAGCTTTGCTACGACCTGGTCGAATAGATAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGAAGACGCATTTTCCAGATACACACATCAAGGATGACATTAGCTGATGATGTCAACTTAGAGGAATTTGTTATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACTGAAGCTGGCTTGCTTGCTTTACGAGAACGCCGAATGAAGGTGACACATGCTGATTTTAAGAAGGCAAAGGATAAAGTCATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTATATGTGA 1383 0.4432 MGQGTPGGLNRKGLPGDRKSDANDKKDKKFEPAAPPARVGRKQRKQKGPEAAARIPTVTPLSKCKLRLLKLERIKDYLLMEEEFVSNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQIEPGCAILMHNKTELVKVRYVISLIEVLSVVGLLQDDVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNKIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0051 460 Pfam ATPase family associated with various cellular activities (AAA) 242 375 IPR003959 GO:0005524|GO:0016887
Lal20g0051 460 Pfam AAA+ lid domain 397 441 IPR041569 -
Lal20g0051 460 CDD AAA 208 375 - -
Lal20g0051 460 Pfam Proteasomal ATPase OB C-terminal domain 115 165 IPR032501 -
Lal20g0051 460 PANTHER BNAA08G13550D PROTEIN 33 460 - -
Lal20g0051 460 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Lal20g0051 460 Gene3D - 195 375 IPR027417 -
Lal20g0051 460 Gene3D - 113 194 IPR012340 -
Lal20g0051 460 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 84 447 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lal20g0051 460 MobiDBLite consensus disorder prediction 14 35 - -
Lal20g0051 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 453 IPR027417 -
Lal20g0051 460 MobiDBLite consensus disorder prediction 88 110 - -
Lal20g0051 460 Gene3D - 380 454 - -
Lal20g0051 460 SMART AAA_5 238 377 IPR003593 -
Lal20g0051 460 MobiDBLite consensus disorder prediction 1 54 - -
Lal20g0051 460 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 33 460 - -
Lal20g0051 460 MobiDBLite consensus disorder prediction 88 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0051 Lal-Chr20 365320 371246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0051 203 445 Miscellaneous Gene Families AT3G47060 43.952 1.39e-54 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0051 K03062 - tcc:18611870 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0051 20 365320 371246 Lal20g0051 20 365320 371246 ECH
Lal11g1109 11 14835171 14839296 Lal20g0051 20 365320 371246 LSH
Lal20g0051 20 365320 371246 Lal12g0880 12 7232526 7238567 PCT
Lal20g0051 20 365320 371246 Lal13g1075 13 8054159 8059584 PCT
Lal20g0051 20 365320 371246 Lal24g0811 24 6433251 6437799 PCT
Lal12g0880 12 7232526 7238567 Lal20g0051 20 365320 371246 PCT
Lal13g1075 13 8054159 8059584 Lal20g0051 20 365320 371246 PCT
Lal24g0811 24 6433251 6437799 Lal20g0051 20 365320 371246 PCT